Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele30g1321 ATGTCTTCTTCAACCGCCCCACCCACCACTTGCGCCTCCGCCTCCTCTGACCACCTCCCTACACCCACATTAGACCGCGAGTCTTCCGCTCTCCTCCGCTCCATTTCCGAGCATGGAGGCTATGCTTACGTCAGCATGGCCGCCATCCTCGGCGACTTTCGAGCTGCCGAAGCTGCCCGTGAGATGGCCTGGGAGCAGCTACACTCGGGGCCTCGGCACTCCGTCCTCCCAGTTTGGCTCGACGCCTACTCCATGGCGTGCCTTCACGTCGCCAAGCACCATTACATCAACGGCGAGTTCAAGGAGGCTCTTAGGGCTTTGGATATGGGACTCATCATGGGGGGATCGCTTCTAAAGAAAGACTTGAGCTCTGCTGCTGACAAAGTATCGGAGAGGCTTGGGAACATTAGGGCCTCCAAAGAAATCCACGAAGTCTTCGGGATGTCTGAGCATCGACTTGTCAGTCACGAACTCAACCAGGCCGAGGTGCACAAACTTCTGCCCTTCAACTCCCTTTCTCATAAAATTGTGGGGAAGAGGTCTGATCTGTCATTGGAAAGGTTCCTAGAAGATTATTACCGGTCTGGCTCCCCGGTTATCATCAGTGATTGTATGGCTCACTGGCCAGCCAAGACAAAATGGAATGACATAGATTATTTGGAAAAAGTTGCTGGTGATCGCACAATTCCGGTTGAGGTTCGGAAGAGTTATTCATGTGCAAAGGGGAAGCAAGAGTTAATTACATTTTCAGAGTTTCTTCGACGTATAGAGTCTCATGGCTTCTCTTCTGTTGGTCCTACATATCTTGCTCAGCATCCCCTATTTGATCAGATAAATGGGCTTCGGAAAGATATTTGCATTCCTGACTACTGTTTTGCTGGTGGAGGCGAGCTAAGATCCCTCAATGCTTGGTTTGGTCCTTCTGGGATGGTAACACCATTACAACATGATCCACACCATAATATACTAGCTCAGGTAGTTGGGAAGAAATATGTAAGGCTCTACCCTCCATCTCTGTCTAAGGAACTTTACCCTTACACTGAAGCAATGCTCATGAATTCCAGCCAGATTGATCTAGATAACATAAATGAAAAGATGTTGCCTGGGGAACAAGACTTGGAATTCGTAGACTGTATATTAGAGGAGGGTGAATTGCTATATATCCCGCAAAAGTGGTGGCACTATGTCCGCTCGCTGACTACAAGTTTCTCCGTTAGTTTTTGGTGGAGTAAGGACCAAGCAGCTACATCCTGA 1254 0.4896 MSSSTAPPTTCASASSDHLPTPTLDRESSALLRSISEHGGYAYVSMAAILGDFRAAEAAREMAWEQLHSGPRHSVLPVWLDAYSMACLHVAKHHYINGEFKEALRALDMGLIMGGSLLKKDLSSAADKVSERLGNIRASKEIHEVFGMSEHRLVSHELNQAEVHKLLPFNSLSHKIVGKRSDLSLERFLEDYYRSGSPVIISDCMAHWPAKTKWNDIDYLEKVAGDRTIPVEVRKSYSCAKGKQELITFSEFLRRIESHGFSSVGPTYLAQHPLFDQINGLRKDICIPDYCFAGGGELRSLNAWFGPSGMVTPLQHDPHHNILAQVVGKKYVRLYPPSLSKELYPYTEAMLMNSSQIDLDNINEKMLPGEQDLEFVDCILEEGELLYIPQKWWHYVRSLTTSFSVSFWWSKDQAATS 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele30g1321 417 PANTHER HYPOXIA-INDUCIBLE FACTOR 1 ALPHA INHIBITOR-RELATED 82 413 - -
Lele30g1321 417 Gene3D Cupin 176 410 - -
Lele30g1321 417 MobiDBLite consensus disorder prediction 1 23 - -
Lele30g1321 417 Pfam Cupin-like domain 187 412 IPR041667 -
Lele30g1321 417 ProSiteProfiles JmjC domain profile. 261 417 IPR003347 -
Lele30g1321 417 SUPERFAMILY Clavaminate synthase-like 180 410 - -
Lele30g1321 417 SMART cupin_9 261 417 IPR003347 -
Lele30g1321 417 FunFam lysine-specific demethylase JMJ30 176 409 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele30g1321 Lele-ChrLele30 15553503 15557088 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele30g1321 171 409 Acyl Lipid Metabolism Gene Families AT3G45880 24.658 1.02e-11 63.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele30g1321 30 15553503 15557088 Lele31g1474 31 20101746 20105773 hybridization
Lele30g1321 30 15553503 15557088 Lele32g0073 32 428679 432285 hybridization