Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele31g1336 ATGTATTCTTTGGGTAGAAATTGCTTGAAACATGGTAGCTGGAGAAAGTTTTTTAATCATCTATGCTTTGCAAACTCATTTTGGCAGCGATTTCAAGAATCAGCTGTGCTCAATAGCCCCAGTGAACAAAATTCTAAGAAGATTACTCTTTATGAGACTCATAAAATTGAACCCTTTTACCAAATCCCTTCTAAAAGAACTCCAGCCCCCCTTGCACCCTCTTGCGTTGCTTCTCATTATTCAACCAAGCCACCTTCAAGGTCATTTCGAAGAAGAGCTCGTAAGAGACTGTTAAAATCCTTGAAGCGTACTCTAGATCAAGCCCAATTTCAATTGGCCTTGTCCCAACTTTCCCCAAGGTTTACTCCTGAAGAACTCTGTAATGTTATTACCTTTCAAGAAGACCCATTAGTTTGCTTGGAGCTCTTTAATTGGGCATCACAACAACCCAGGTTTCGGCACAACGCCAACACTTATCACATAACCATACAGAAGCTCGGTGCAGTACAAATGTACCAAGAAATGGACGATATTGTCAATCAAGTGCTTGCGGTTCCATTAATTTGTTCAGAGGCACTTTACAATACTATAATATATTATTTCACAGAAGCTCGAAAGTTGACGCGAGCTGTCAATATATTTAACCACATGAAAAGTAGCAGAAATATGAATTGCAAGCCTTCTATCAGAACCTATAATATCCTTTTTCCGGCACTGTTGAGCAGAGGAAGCAATTCTTATGTAAATCATGCGTATATGGACCCTATTAGATGTCTGTTTAAGCAAATGGTCAACGATGGGATAGAGCCTGATATATTTTCTTTAAATTCCATGATTAAAGGTTATGTGCTTTCTCTCCATGTTAATGATGCGCTGAGGATATTCCATCAGATGGGTGTGGTTTATGCTTGCAAGCCTAACTCATTTACCTACGATTATTTGATCCACGGCTTGTGTGCGCAAGGAAGAACGAAGAATGCTATAGAGATATGCAATGAAATGAAGACTGGAGGCTTCACCCCAAGTAGCAAATCTTATAACTCACTTGTCAATGCTTTGGCAATTGGTGGAGAGATCGAGGAAGCAGTAACTTATCTGTGGGAGATGACTGAAAATCAGAGGTCGGGTGATTTTATTACATATAGGACTGTACTGGATGAGATATGTAGACAAGGAAGAGTTCAGGAGGCAATGAGGTTATTGCAGGAGTTTCAAGAGAAGGACCTTGTGGATGGGCATGCTTACAGAAAGCTTCTTTATGTGCTGGAAGATGACTATGGGAATTCAGTTAGCAGAGTTGATCCAGGAGAATTCCACAACAGCACTGTTGCTCATGGCAGGATTGAAGGTGATGAAAGCAATTCTCAGAAGAATGGTGATGAGGAAGCAAAATTTGGAAGAACAGTGATGCAAATGTGGGACAAAACGATTAGTATCCTCTGA 1443 0.4026 MYSLGRNCLKHGSWRKFFNHLCFANSFWQRFQESAVLNSPSEQNSKKITLYETHKIEPFYQIPSKRTPAPLAPSCVASHYSTKPPSRSFRRRARKRLLKSLKRTLDQAQFQLALSQLSPRFTPEELCNVITFQEDPLVCLELFNWASQQPRFRHNANTYHITIQKLGAVQMYQEMDDIVNQVLAVPLICSEALYNTIIYYFTEARKLTRAVNIFNHMKSSRNMNCKPSIRTYNILFPALLSRGSNSYVNHAYMDPIRCLFKQMVNDGIEPDIFSLNSMIKGYVLSLHVNDALRIFHQMGVVYACKPNSFTYDYLIHGLCAQGRTKNAIEICNEMKTGGFTPSSKSYNSLVNALAIGGEIEEAVTYLWEMTENQRSGDFITYRTVLDEICRQGRVQEAMRLLQEFQEKDLVDGHAYRKLLYVLEDDYGNSVSRVDPGEFHNSTVAHGRIEGDESNSQKNGDEEAKFGRTVMQMWDKTISIL 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele31g1336 480 Gene3D Tetratricopeptide repeat domain 287 472 IPR011990 GO:0005515
Lele31g1336 480 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 377 411 IPR002885 -
Lele31g1336 480 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL 70 243 - -
Lele31g1336 480 TIGRFAM PPR: pentatricopeptide repeat domain 309 342 IPR002885 -
Lele31g1336 480 TIGRFAM PPR: pentatricopeptide repeat domain 379 409 IPR002885 -
Lele31g1336 480 TIGRFAM PPR: pentatricopeptide repeat domain 193 220 IPR002885 -
Lele31g1336 480 TIGRFAM PPR: pentatricopeptide repeat domain 274 307 IPR002885 -
Lele31g1336 480 Pfam PPR repeat 379 408 IPR002885 -
Lele31g1336 480 Pfam PPR repeat 274 298 IPR002885 -
Lele31g1336 480 Gene3D Tetratricopeptide repeat domain 79 253 IPR011990 GO:0005515
Lele31g1336 480 Pfam PPR repeat family 306 354 IPR002885 -
Lele31g1336 480 Pfam PPR repeat family 193 239 IPR002885 -
Lele31g1336 480 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 307 341 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele31g1336 Lele-ChrLele31 19314622 19316987 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele31g1336 148 409 Glycosyltransferase AT1G05670 29.389 1.02e-28 118
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele29g0214 29 1246869 1250006 Lele31g1336 31 19314622 19316987 hybridization
Lele30g1195 30 14741096 14743428 Lele31g1336 31 19314622 19316987 hybridization