Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele31g1307 ATGCCCTCCGATACGGGTTCTTCCGCCTCCGACCATGACCTCCACCCCAACCCTCAATCGGTTGAAGAACAATTGGCTTCGGTCACATTGTCTGTTTCCGATGGCGAACCATCGGCGCATCAAGAAACAAACGGTGTCGTCCTCGAGTCCGTCAATCAGAACACTCAATTTGCAATGGAGGAACAAGTTCAGCGCAATTCAGTTCCTGCTGATGAAATTGGTGAGGTTAGGGAGTCTGCCGACTGCGATGTTCTATGGGGGAGGACCGCTTCGGAGCTCGAGATGGATGGGTTGTCCAGCCCTAGCAGTAGTGGGTATGCTGGTGAAAGGGGCAGTAGCAGCGCGACAAGCGGCTCGGTAATTGGCGACGTTGTTGAGCAGGATGAAATTGAGGAGACGGGGAATGATGTTGTAGTCGACGAAGTCTCTGATTCCCACACTTCTTGGCTTCCTGCGAAACGACATGTAGATGAGGATGATGCTTCCATATCATGGAGGAAAAGGAAGAAGCATTTTTTTATTCTGAGTAATTCTGGCAAACCAATATATTCGAGATATGGGGATGAACACAAGCTTGCAGGATTTTCAGCTACTTTGCAAGCAATAATTTCCTTTGTAGAGGACGGGGGTGACCGGGTCAAATTGTTGAGGGCTGGAAAGCATCAGGTGGTTTTTCTGGTGAAAGGACCAATTTACTTAGTTTGCATCAGCTGCACAGAAGAACCTTATGAGTCATTAAAAGGGCAATTGGAGCTTATTTATGATCAGATGCTAGTTATCTTAACAAAGTCAGTGAACAGATGTTTTGAGAAGAACCCAAAGTTTGACATGACACCACTGCTTGGAGGAACAGACATTGTCTTCTCTTCTCTTATACATTCTTTCAGTTGGAATCCAGCTACATTTCTTCATGCCTATACTTGTCTCCCTCTTGCATATGCTACAAGGCAAGCTGCCGGCGCTATCTTGCAAGATGTTGCTGATTCAGGTGTTTTGTTTGCAATACTAATGAGCAGGCACAAGGTAGTCAGTCTTGTTGGTGCTCAGAAAGCTTCTCTTCATCCAGATGATATGCTGCTACTTGCCAATTTTGTGATGTCCTCAGAATCCTTTAGGACATCAGAATCATTTTCTCCAGTTTGCTTGCCAAGATATAATCCTTTTGCATTCTTGTATGCCTATATCCATTATTTTGATGTGAGTGATTTGGCTGACACATACTTGATGTTGCTAACCACTAGTTCAGATGCCTTTTATCATCTCAAGGATTGTAGGATTCGTATTGAAATGGTCCTTTTGAAATCAAATGTCCTTAGTGAAGTTCAGAGATCCTTGATAGATGGTGGTATGCACATTGAGGATCTGCTTGTTGACCCTTTAACCCGTTCTGAATCATCTCCTCATCTAGGCCAGCACAAGCCTCCAACAGAGTCTCTTGAGAGGTTGAAGGAACCTTATCTTGGTGTTGGTGGTCCTGCTGGGTTGTGGCATTTCATATATCGCAGTATATATCTAGATCAATATGTTTCTTCAGAGTTCTCGTCTCCAATTAACACTCCTCCGCAGCAGAAAAGACTGTATAGAGCTTACCAGAAACTTTTTGCATCTATGCATGATAAAGGAGTTGGGCCGCACAAAACTCAATTTAGAAGAGATGAAAACTATGTTCTTCTCTGTTGGGTGACACAGGATTTTGAACTTTATGCAGCCTTTGATCCCCTTGCAGACAAGGCCTCGGCAATAAAGGCTTGCAATCGGGTTTGTCAATGGGTGAAAGATGTCGAGAACGAGATATTTTTGCTAGGTTCTAGCCCCTTCTCTTGAGGTCACTTAAATGGCTATGGGACAGATAGTCGTAGTTGCACATGAGAAAGTGCGGAAGCTTACGGCGCAGAAATGTATAAGAACCAGCTTCAGGAGCTGGCACAACGGAGCTGCTTCAACCTTCCTTCCTACTCGTGCATTAGGGAAGGTCCCGATCACGCGCCGAGGTTTAAGGCCGCCGTTAACTTCAACGGCGAGATCTTCGAAAGCCCTCATCACTGCTCTACTCTCCGTCAGGCCGAGCACTCTGCTGCCGAGGTTGCCCTCAATTCCCTCTCCAGCCGTGGGCCCTCAAACTCGCTAGCTGCTCGGATTCTGGATGAGACCGGAGTATACAAGAACTTATTACAGGAAATTGCACAAAGGGTTGGGGCTCCATTGCCACAGTACACAACATACAGATCAGGCCTAGGACATTTACCTGTTTTTACTGGGACAGTGGAATTGGCAGGTATCACATTCACTGGTGAACCTGCCAAGAATAAGAAACAAGCAGAGAAAAATGCAGCTATGGCAGCCTGGTCATCACTAAAACAATTGGCAAAAGAAACTGCAAGCTCTTCATCTGAACAAGAGAACAATGACGAATTAGAACAGATCACAATAGCACGGGCTTTACTGAACTACCGCCTGAAGGAAAAGATGTCAATGTCAAATTCTAATGCTCCAATTCCATTTCCAAAAAAGTTTCAGATTCAAAATCCTAGGTCAAGTAGCCCGCAACCTCCACCTGTCACTACATCAAAGATCCTTCCTTTAATTTGCCAAAGGATGTCACCTCGAAGCAGGCCGCCACAGGGGGCAGCAGCCAGTGACAATGCCATGGCACAGACTTCTTTACCAGAAAACAGAGGGCCCCGTCCCATGAAATTCCCTGCTGCAGGAGCAGCACCATATGTCCCCATACGACAAATGAGATCACCTTGCCGTGGAATTGCACCACCTGTGACTATAAGGACCGCGGTTCCTGTATTCTCTGCACCGCCACTTCCACCATCAACTAGAGTGTCCCATCAGATGATTGGGACCCCCCCTGTACAAGTTGCCCCTCCAGTCAATATTAGACAAGCCATTCCGGTTTATGCTGCTCCACCAGTTCGAAAAGATGAACCTACTCCGATCCCAGAAGATCCCCTTACTGTAAGTGCCCCTAGCCCACAAGATAAAGCGCCTGCTAAACCTCAGGAGACAGACACCAAGACTGAGAACACCACACCAGAATCTCAGACAGCTCAGAGCCTGGAGCAGCTTAAAATTTGA 3084 0.4634 MPSDTGSSASDHDLHPNPQSVEEQLASVTLSVSDGEPSAHQETNGVVLESVNQNTQFAMEEQVQRNSVPADEIGEVRESADCDVLWGRTASELEMDGLSSPSSSGYAGERGSSSATSGSVIGDVVEQDEIEETGNDVVVDEVSDSHTSWLPAKRHVDEDDASISWRKRKKHFFILSNSGKPIYSRYGDEHKLAGFSATLQAIISFVEDGGDRVKLLRAGKHQVVFLVKGPIYLVCISCTEEPYESLKGQLELIYDQMLVILTKSVNRCFEKNPKFDMTPLLGGTDIVFSSLIHSFSWNPATFLHAYTCLPLAYATRQAAGAILQDVADSGVLFAILMSRHKVVSLVGAQKASLHPDDMLLLANFVMSSESFRTSESFSPVCLPRYNPFAFLYAYIHYFDVSDLADTYLMLLTTSSDAFYHLKDCRIRIEMVLLKSNVLSEVQRSLIDGGMHIEDLLVDPLTRSESSPHLGQHKPPTESLERLKEPYLGVGGPAGLWHFIYRSIYLDQYVSSEFSSPINTPPQQKRLYRAYQKLFASMHDKGVGPHKTQFRRDENYVLLCWVTQDFELYAAFDPLADKASAIKACNRVCQWVKDVENEIFLLGSSPFSXGHLNGYGTDSRSCTXESAEAYGAEMYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGEIFESPHHCSTLRQAEHSAAEVALNSLSSRGPSNSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTYRSGLGHLPVFTGTVELAGITFTGEPAKNKKQAEKNAAMAAWSSLKQLAKETASSSSEQENNDELEQITIARALLNYRLKEKMSMSNSNAPIPFPKKFQIQNPRSSSPQPPPVTTSKILPLICQRMSPRSRPPQGAAASDNAMAQTSLPENRGPRPMKFPAAGAAPYVPIRQMRSPCRGIAPPVTIRTAVPVFSAPPLPPSTRVSHQMIGTPPVQVAPPVNIRQAIPVYAAPPVRKDEPTPIPEDPLTVSAPSPQDKAPAKPQETDTKTENTTPESQTAQSLEQLKI 1027
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele31g1307 1027 PRINTS Saccharomyces cerevisiae 73.5kDa hypothetical protein signature 586 606 IPR004353 GO:0006623
Lele31g1307 1027 PRINTS Saccharomyces cerevisiae 73.5kDa hypothetical protein signature 188 208 IPR004353 GO:0006623
Lele31g1307 1027 PRINTS Saccharomyces cerevisiae 73.5kDa hypothetical protein signature 326 339 IPR004353 GO:0006623
Lele31g1307 1027 PRINTS Saccharomyces cerevisiae 73.5kDa hypothetical protein signature 302 323 IPR004353 GO:0006623
Lele31g1307 1027 PRINTS Saccharomyces cerevisiae 73.5kDa hypothetical protein signature 375 398 IPR004353 GO:0006623
Lele31g1307 1027 PRINTS Saccharomyces cerevisiae 73.5kDa hypothetical protein signature 170 187 IPR004353 GO:0006623
Lele31g1307 1027 PRINTS Saccharomyces cerevisiae 73.5kDa hypothetical protein signature 350 366 IPR004353 GO:0006623
Lele31g1307 1027 PRINTS Saccharomyces cerevisiae 73.5kDa hypothetical protein signature 407 433 IPR004353 GO:0006623
Lele31g1307 1027 PRINTS Saccharomyces cerevisiae 73.5kDa hypothetical protein signature 573 586 IPR004353 GO:0006623
Lele31g1307 1027 PRINTS Saccharomyces cerevisiae 73.5kDa hypothetical protein signature 222 236 IPR004353 GO:0006623
Lele31g1307 1027 PRINTS Saccharomyces cerevisiae 73.5kDa hypothetical protein signature 557 571 IPR004353 GO:0006623
Lele31g1307 1027 PRINTS Saccharomyces cerevisiae 73.5kDa hypothetical protein signature 273 285 IPR004353 GO:0006623
Lele31g1307 1027 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 719 787 IPR014720 -
Lele31g1307 1027 FunFam Double-stranded RNA-binding protein 2 716 787 - -
Lele31g1307 1027 SUPERFAMILY dsRNA-binding domain-like 720 791 - -
Lele31g1307 1027 Pfam Double-stranded RNA binding motif 720 785 IPR014720 -
Lele31g1307 1027 Pfam Double-stranded RNA binding motif 634 700 IPR014720 -
Lele31g1307 1027 CDD DSRM_AtDRB-like_rpt2 718 786 IPR044451 GO:0003725
Lele31g1307 1027 Pfam Second Longin domain of FUZ, MON1 and HPS1 331 426 IPR043971 GO:0016192
Lele31g1307 1027 MobiDBLite consensus disorder prediction 1005 1027 - -
Lele31g1307 1027 Gene3D - 634 715 - -
Lele31g1307 1027 MobiDBLite consensus disorder prediction 826 900 - -
Lele31g1307 1027 MobiDBLite consensus disorder prediction 93 127 - -
Lele31g1307 1027 SUPERFAMILY dsRNA-binding domain-like 634 700 - -
Lele31g1307 1027 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 633 702 IPR014720 -
Lele31g1307 1027 Gene3D - 716 786 - -
Lele31g1307 1027 CDD DSRM_AtDRB-like_rpt1 633 701 IPR044450 GO:0003725
Lele31g1307 1027 Pfam Third Longin domain of FUZ, MON1 and HPS1 494 594 IPR043970 GO:0016192
Lele31g1307 1027 MobiDBLite consensus disorder prediction 826 844 - -
Lele31g1307 1027 MobiDBLite consensus disorder prediction 971 1027 - -
Lele31g1307 1027 MobiDBLite consensus disorder prediction 95 121 - -
Lele31g1307 1027 MobiDBLite consensus disorder prediction 1 53 - -
Lele31g1307 1027 PANTHER SAND PROTEIN-RELATED 32 606 IPR004353 GO:0006623
Lele31g1307 1027 FunFam Double-stranded RNA-binding protein 2 631 702 - -
Lele31g1307 1027 Pfam First Longin domain of FUZ, MON1 and HPS1 170 290 IPR043972 GO:0016192
Lele31g1307 1027 SMART DRBM_3 634 701 IPR014720 -
Lele31g1307 1027 SMART DRBM_3 720 786 IPR014720 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele31g1307 Lele-ChrLele31 19157811 19169750 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele10g1141 10 22727834 22729822 Lele31g1307 31 19157811 19169750 CCT
Lele29g0242 29 1393298 1397866 Lele31g1307 31 19157811 19169750 hybridization
Lele30g1165 30 14585469 14590225 Lele31g1307 31 19157811 19169750 hybridization