Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele30g1165 ATGCCCTCAGATAGGGGTTCTTCCGCCTCCGACCATGACCTCGACCCCGAGCCTCAATTGGTAGAAGAACAATTGGCTTCGGTCACATTGTCCGTTTCCGACGGCGAACCATCAGCGCATCAAGAAACAAACGGGGTCGTCCTTGACTCTGTCAATCAGGAAACTCAATTTGTAATGGAGGAACAGGTTCAGCGCAATTCAGTTCCTGCCGATGAAATTGGTGAGGTTAGGGAGTCTGCTGACCGCGATGTCGTATGGGGAAGGACCGCTTCCGAGCTCGAGATGGATGGGTTGTCCAGCCCTAGCAGCAGTGGGTATGCTGGGGAAAGGGGCAGTAGCAGCGCGACTAGCGGCTCGGTAATTGGCGACGGTGTTGAGCAGGATGAAATTGAGGAGACGGAGAATGATGTTGTAGTCGTCGAAGTCTCTGATTCCCGCACGTCCTGGCTTCCTGCGAAACGACATGTAGATGAGGATGATGCTTCCATATCATGGAGGAAAAGGAAGAAGCATTTTTTTATTCTGAGTAATTCTGGCAAACCAATATACTCGAGATATGGGGATGAACACAAGCTTGCAGGATTTTCAGCTACTTTGCAAGCGATAATTTCTTTTGTAGAGGACGGGGGTGACCGGGTCAAATTGTTGAGGGCTGGAAAGCATCAGGTGGTTTTTCTGGTGAAAGGACCAATTTACTTAGTTTGCATCAGCTGCACAGAAGAACCTTATGAGTCGTTAAAAGGGCAATTGGAGCTTATCTACGATCAGATGCTAGTTATATTAACAAAGTCAGTGAACAGATGTTTTGAGAAGAATCCAAAGTTTGACATGACACCCCTGCTTGGAGGAACAGACATTGTCTTCTCTTCTCTTATACATTCTTTCAGTTGGAATCCAGCTACATTTCTTCATGCCTATACTTGTCTCCCTCTTGCATATGCTACAAGGCAAGCTGCCTGCGCCATCTTGCAAGATGTTGCTGATTCAGGTGTTTTCTTTGCAATACTAATGAGCAGGCACAAGGTAGTTAGTCTTGTTGGTGCTCAGAAAGCTTCTCTTCATCCAGATGATATGCTGCTACTTGCCAACTTTGTAATGTCCTCAGAATCCTTTAGGACATCAGAATCGTTTTCTCCAGTTTGCTTGCCAAGATATAATCCTTTTGCATTTTTGTATGCCTATATCCATTATTTTGATGCTGACACGTACTTGATGTTGCTAACCACTAGTTCAGATGCCTTCTATCATCTCAAGGATTGTAGGATTCGTATTGAAATGGTCCTTTTGAAATCAAATGTCCTTAGCGAAGTTCAGAGATCCTTGATAGATGGCGGTATGCACATTGAGGATCTGCTTGTTGACCCTTTAACCCGTTCTGAATCATCTCCTCATCTAGGCCAGCACAAGCCTCCAACAGAGTCTCTTGAGAGTTTGAAGGAACCTTATCTTGGTGTTGGTGGTCCTGCTGGGTTGTGGCATTTCATATATCGCAGTATATATCTAGATCAATATGTATCTTCAGAGTTCTCGTCTCCAATCAACACTCCTCGGCAGCAGAAAAGACTGTATAGAGCTTACCAGAAACTTTTTGCATCTATGCATGATAAAGGAGTTGGGCCGCACAAAACTCAATTTAGAAGAGATGAAAACTACGTTCTTCTCTGTTGGGTGACACAGGATTTTGAACTTTATGCAGCCTTTGATCCCCTTGCAGACAAGGCCTCAGCAATAAAGGCTTGCAATCGGGTTTGTCAATGGGTGAAAGAGGTCGAGAACGAGATATTTTTGCTAGGTTCTAGCGCCTTCTCTTGGTGA 1815 0.4501 MPSDRGSSASDHDLDPEPQLVEEQLASVTLSVSDGEPSAHQETNGVVLDSVNQETQFVMEEQVQRNSVPADEIGEVRESADRDVVWGRTASELEMDGLSSPSSSGYAGERGSSSATSGSVIGDGVEQDEIEETENDVVVVEVSDSRTSWLPAKRHVDEDDASISWRKRKKHFFILSNSGKPIYSRYGDEHKLAGFSATLQAIISFVEDGGDRVKLLRAGKHQVVFLVKGPIYLVCISCTEEPYESLKGQLELIYDQMLVILTKSVNRCFEKNPKFDMTPLLGGTDIVFSSLIHSFSWNPATFLHAYTCLPLAYATRQAACAILQDVADSGVFFAILMSRHKVVSLVGAQKASLHPDDMLLLANFVMSSESFRTSESFSPVCLPRYNPFAFLYAYIHYFDADTYLMLLTTSSDAFYHLKDCRIRIEMVLLKSNVLSEVQRSLIDGGMHIEDLLVDPLTRSESSPHLGQHKPPTESLESLKEPYLGVGGPAGLWHFIYRSIYLDQYVSSEFSSPINTPRQQKRLYRAYQKLFASMHDKGVGPHKTQFRRDENYVLLCWVTQDFELYAAFDPLADKASAIKACNRVCQWVKEVENEIFLLGSSAFSW 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele30g1165 604 Pfam First Longin domain of FUZ, MON1 and HPS1 170 290 IPR043972 GO:0016192
Lele30g1165 604 MobiDBLite consensus disorder prediction 95 121 - -
Lele30g1165 604 PRINTS Saccharomyces cerevisiae 73.5kDa hypothetical protein signature 553 567 IPR004353 GO:0006623
Lele30g1165 604 PRINTS Saccharomyces cerevisiae 73.5kDa hypothetical protein signature 170 187 IPR004353 GO:0006623
Lele30g1165 604 PRINTS Saccharomyces cerevisiae 73.5kDa hypothetical protein signature 582 602 IPR004353 GO:0006623
Lele30g1165 604 PRINTS Saccharomyces cerevisiae 73.5kDa hypothetical protein signature 326 339 IPR004353 GO:0006623
Lele30g1165 604 PRINTS Saccharomyces cerevisiae 73.5kDa hypothetical protein signature 222 236 IPR004353 GO:0006623
Lele30g1165 604 PRINTS Saccharomyces cerevisiae 73.5kDa hypothetical protein signature 302 323 IPR004353 GO:0006623
Lele30g1165 604 PRINTS Saccharomyces cerevisiae 73.5kDa hypothetical protein signature 569 582 IPR004353 GO:0006623
Lele30g1165 604 PRINTS Saccharomyces cerevisiae 73.5kDa hypothetical protein signature 188 208 IPR004353 GO:0006623
Lele30g1165 604 PRINTS Saccharomyces cerevisiae 73.5kDa hypothetical protein signature 350 366 IPR004353 GO:0006623
Lele30g1165 604 PRINTS Saccharomyces cerevisiae 73.5kDa hypothetical protein signature 273 285 IPR004353 GO:0006623
Lele30g1165 604 PRINTS Saccharomyces cerevisiae 73.5kDa hypothetical protein signature 375 398 IPR004353 GO:0006623
Lele30g1165 604 PRINTS Saccharomyces cerevisiae 73.5kDa hypothetical protein signature 403 429 IPR004353 GO:0006623
Lele30g1165 604 PANTHER SAND PROTEIN-RELATED 52 601 IPR004353 GO:0006623
Lele30g1165 604 MobiDBLite consensus disorder prediction 92 134 - -
Lele30g1165 604 Pfam Second Longin domain of FUZ, MON1 and HPS1 331 422 IPR043971 GO:0016192
Lele30g1165 604 Pfam Third Longin domain of FUZ, MON1 and HPS1 490 591 IPR043970 GO:0016192
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele30g1165 Lele-ChrLele30 14585469 14590225 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele10g1141 10 22727834 22729822 Lele30g1165 30 14585469 14590225 CCT
Lele30g1165 30 14585469 14590225 Lele31g1307 31 19157811 19169750 hybridization
Lele30g1165 30 14585469 14590225 Lele32g0230 32 1368871 1373798 hybridization