Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele31g1166 ATGGCGATTCTTTACGCTTTGGTGGCGAGAGGTACGGTGTTGCTGGCGGAATTCAGCGCCGTCACCGGCAATGCAGGCGCTGTGGCTCGTCGGATCCTGGAGAAGCTTCCGGATGAAGCCGATTCTAGGCTGTGCTTCTCTCAGGATCGTTATATCTTTCACATACTGCGATCCGATGGCCTTACCTACCTCTGTATGGCCAACGATACCTTTGGAAGTGAAAATCTTCTTCGGCTTCCATCTTCTACCTTTCTGAAATCATTACCACTGCCTGGAGAGAATTTCAAAATTTTCCTAACTACTCATCAGAGCATTGAGTATTCTTGGAAACAAACATTGCAAGAGTTTGGTACAGGGAGAATTCCTTTTGCTTACTTGGAAGATATTCATATGAGGTTTATGAAGAATTACAGCAGAGTGGCCCTTTATGCGCCAGCTTATGCAATGAATGATGAGTTTTCAAGGGTTTTACATCAGCAAATGGAATTTTTTTCAAGTAGTTCTAGTGTAGATACTCTCAACCGAGTGAGGAGCGAAGTTGTGGAAAATATTGAGAAAATATTGGAGAGAGGTGACCGTATTGAGCTTCTTGTTGATAAGACGGCAACAATGCAAGACAGTGCGTTTCATTTTAGGAAACAGTCCAAGCGCCTCCGAAGAGCTCTTTGGATGAAAAATGCCAAACTCTTGGCATTGTTGACATTCTTGATTGTTCTGTTTCTTTACTTTATAATTGCTGCTTGTTGTGGAGGCATCACTTTACCGTCCTGTAGATCTTGA 780 0.4321 MAILYALVARGTVLLAEFSAVTGNAGAVARRILEKLPDEADSRLCFSQDRYIFHILRSDGLTYLCMANDTFGSENLLRLPSSTFLKSLPLPGENFKIFLTTHQSIEYSWKQTLQEFGTGRIPFAYLEDIHMRFMKNYSRVALYAPAYAMNDEFSRVLHQQMEFFSSSSSVDTLNRVRSEVVENIEKILERGDRIELLVDKTATMQDSAFHFRKQSKRLRRALWMKNAKLLALLTFLIVLFLYFIIAACCGGITLPSCRS 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele31g1166 259 SUPERFAMILY SNARE-like 120 164 IPR011012 -
Lele31g1166 259 Pfam Synaptobrevin 171 250 IPR042855 -
Lele31g1166 259 Gene3D Longin domain 1 89 - -
Lele31g1166 259 SMART Longin_2 28 156 IPR010908 -
Lele31g1166 259 PRINTS Synaptobrevin signature 170 189 IPR001388 GO:0016020|GO:0016192
Lele31g1166 259 PRINTS Synaptobrevin signature 190 209 IPR001388 GO:0016020|GO:0016192
Lele31g1166 259 PRINTS Synaptobrevin signature 226 245 IPR001388 GO:0016020|GO:0016192
Lele31g1166 259 ProSitePatterns Synaptobrevin signature. 183 202 IPR001388 GO:0016020|GO:0016192
Lele31g1166 259 ProSiteProfiles Longin domain profile. 120 157 IPR010908 -
Lele31g1166 259 ProSiteProfiles Longin domain profile. 7 72 IPR010908 -
Lele31g1166 259 Pfam Regulated-SNARE-like domain 120 154 IPR010908 -
Lele31g1166 259 Pfam Regulated-SNARE-like domain 29 73 IPR010908 -
Lele31g1166 259 Gene3D - 162 248 - -
Lele31g1166 259 SUPERFAMILY SNARE fusion complex 172 226 - -
Lele31g1166 259 CDD R-SNARE 171 223 - -
Lele31g1166 259 ProSiteProfiles v-SNARE coiled-coil homology domain profile. 165 225 IPR042855 -
Lele31g1166 259 SUPERFAMILY SNARE-like 3 73 IPR011012 -
Lele31g1166 259 FunFam Vesicle-associated membrane protein 7 167 248 - -
Lele31g1166 259 PANTHER SNARE PROTEINS 1 245 - -
Lele31g1166 259 CDD Longin 4 164 IPR010908 -
Lele31g1166 259 Gene3D Longin domain 110 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele31g1166 Lele-ChrLele31 18198037 18200336 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele31g1166 1 259 Miscellaneous Gene Families AT5G22360 68.539 9.55e-125 352
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele29g0374 29 2286426 2288745 Lele31g1166 31 18198037 18200336 hybridization
Lele30g1032 30 13694472 13696560 Lele31g1166 31 18198037 18200336 hybridization