Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele30g1032 ATGGCGATTCTTTACGCTATGGTGGCGAGAGGTACGGTGGTGCTGGCGGAATTCAGCGCCGTCACCGGCAATACAGGCGCTGTGGCTCGCCGGATCCTGGAGAAGCTTCCGGATGAAGCTGATTCTAGGCTGTGCTTCTCTCAGGATCGTTATATCTTTCACATACTGCGATCCGATGGCCTAACCTACCTCTGTATGGCCAACGATACCTTTGGAAGGAGAATTCCTTTTGCTTACTTGGAAGATATTCAAATGAGATTTATGAAGAATTACAGCAGAGTGGCCCTTTATGCACCAGCTTATGCAATGAATGATGAGTTTTCAAGGGTTTTACATCAGCAAATGGAATTTTTTTCAAGTAGTTCTAGTGCAGATACTCTCAACCGAGTGAGGAGCGAAGTTGGTGAGATTCGCACTATCATGGTGGAAAATATTGAGAAAATATTGGAGAGAGGTGACCGGATTGAGCTTCTAGTGGATAAGACGGCAACAATGCAAGACAGTGCGTTTCATTTTAGGAAACAATCCAAGCGCCTCCGAAGAGCTCTTTGGATGAAAAATGCCAAACTCTTGGCATTGTTGACATTCTTGATTGTTCTGTTTCTCTACTTTATAATTGCTGCTTGTTGTGGAGGCATCACTTTACCGTCCTGCAGATCTTGA 663 0.448 MAILYAMVARGTVVLAEFSAVTGNTGAVARRILEKLPDEADSRLCFSQDRYIFHILRSDGLTYLCMANDTFGRRIPFAYLEDIQMRFMKNYSRVALYAPAYAMNDEFSRVLHQQMEFFSSSSSADTLNRVRSEVGEIRTIMVENIEKILERGDRIELLVDKTATMQDSAFHFRKQSKRLRRALWMKNAKLLALLTFLIVLFLYFIIAACCGGITLPSCRS 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele30g1032 220 Pfam Synaptobrevin 124 211 IPR042855 -
Lele30g1032 220 PANTHER SNARE PROTEINS 1 206 - -
Lele30g1032 220 Gene3D Longin domain 1 123 - -
Lele30g1032 220 CDD R-SNARE 125 184 - -
Lele30g1032 220 FunFam Vesicle-associated membrane protein 714 1 124 - -
Lele30g1032 220 SMART Longin_2 28 110 IPR010908 -
Lele30g1032 220 SUPERFAMILY SNARE-like 3 118 IPR011012 -
Lele30g1032 220 ProSiteProfiles Longin domain profile. 7 111 IPR010908 -
Lele30g1032 220 ProSiteProfiles v-SNARE coiled-coil homology domain profile. 126 186 IPR042855 -
Lele30g1032 220 SUPERFAMILY SNARE fusion complex 122 187 - -
Lele30g1032 220 CDD Longin 4 118 IPR010908 -
Lele30g1032 220 Pfam Regulated-SNARE-like domain 29 108 IPR010908 -
Lele30g1032 220 FunFam Vesicle-associated membrane protein 7 124 209 - -
Lele30g1032 220 ProSitePatterns Synaptobrevin signature. 144 163 IPR001388 GO:0016020|GO:0016192
Lele30g1032 220 Gene3D - 124 209 - -
Lele30g1032 220 PRINTS Synaptobrevin signature 131 150 IPR001388 GO:0016020|GO:0016192
Lele30g1032 220 PRINTS Synaptobrevin signature 151 170 IPR001388 GO:0016020|GO:0016192
Lele30g1032 220 PRINTS Synaptobrevin signature 187 206 IPR001388 GO:0016020|GO:0016192
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele30g1032 Lele-ChrLele30 13694472 13696560 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele30g1032 1 220 Miscellaneous Gene Families AT5G22360 85.068 4.82e-141 391
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele30g1032 30 13694472 13696560 Lele31g1166 31 18198037 18200336 hybridization
Lele30g1032 30 13694472 13696560 Lele32g0359 32 2235664 2237750 hybridization