Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele29g0374 ATGGCGATTCTTTACGCTTTGGTGGCGAGAGGTACGGTGTTGCTGGCGGAATTCAGCGCCGTCACCGGCAATACAGGCGCTGTGGCTCGCCGGATCCTGGAGAAGCTTCCGGATGAAGCCGATTCTAGGCTGTGCTTCTCTCAGGATCGTTATATCTTTCACATACTGCGATCCGATGGCCTTACCTACCTCTGTATGGCCAACGATACCTTTGGAAGTGATTCAAAGTTTGCTTTCTGCCTTAGACATCTTCTTCGACTTCCATCTTCCACATTTCTGAAATCATTAACACTGCCTGGAGAGAATTTCAAAATTTTCCTAACTACTCATCAGAGCATTGAGTATTCTTGGAAACAAACATTGCAAGAGTCTGGTACAGGGAGAATTCCTTTTGCTTACTTGGAAGATATTCAAATGAGGTTTATGAAGAATTACAGCAGAGTGGCCCTTTATGCGCCAGCTTATGCAATGAATGATGAGTTTTCAAGGGTTTTACATCAGCAAATGGAATTTTTTTCAAGTAGTTCTAGTGCAGATACTCTCAACCGAGTGAGGAGCGAAGTTGATGAGGCAAGTGTTATTCTAGCCAAGCTTTTTGCACCCTCTTTCCCCACCTCCTCATCTTTCCTTGCCATTATTATTCGCACCATCATGGTGGTAAATATTGAGAAAATATTGGAGAGAGGTGACCGGATTGAGCTTCTAGTTGATAAGACGGCAACAATGCAAGACAGTGCGTTTCACTTTAGGAAACAGTCCAAGCGCCTCCGAAGAGCTCTTTGGATGAAAAATGCCAAACTCTTGGCATTGTTGACATTCTTGATTGTTCTGTTTCTTTACTTTATAATTGCTGCTTGTTGTGGAGGCATCACTTTACCTTCCTGTAGATCTTGA 894 0.4351 MAILYALVARGTVLLAEFSAVTGNTGAVARRILEKLPDEADSRLCFSQDRYIFHILRSDGLTYLCMANDTFGSDSKFAFCLRHLLRLPSSTFLKSLTLPGENFKIFLTTHQSIEYSWKQTLQESGTGRIPFAYLEDIQMRFMKNYSRVALYAPAYAMNDEFSRVLHQQMEFFSSSSSADTLNRVRSEVDEASVILAKLFAPSFPTSSSFLAIIIRTIMVVNIEKILERGDRIELLVDKTATMQDSAFHFRKQSKRLRRALWMKNAKLLALLTFLIVLFLYFIIAACCGGITLPSCRS 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele29g0374 297 Gene3D Longin domain 1 86 - -
Lele29g0374 297 SUPERFAMILY SNARE-like 127 172 IPR011012 -
Lele29g0374 297 SUPERFAMILY SNARE-like 3 79 IPR011012 -
Lele29g0374 297 SMART Longin_2 28 164 IPR010908 -
Lele29g0374 297 CDD R-SNARE 179 261 - -
Lele29g0374 297 Pfam Synaptobrevin 214 288 IPR042855 -
Lele29g0374 297 SUPERFAMILY SNARE fusion complex 215 264 - -
Lele29g0374 297 ProSiteProfiles Longin domain profile. 128 165 IPR010908 -
Lele29g0374 297 Gene3D Longin domain 94 198 - -
Lele29g0374 297 Pfam Regulated-SNARE-like domain 29 79 IPR010908 -
Lele29g0374 297 Pfam Regulated-SNARE-like domain 128 162 IPR010908 -
Lele29g0374 297 PANTHER SNARE PROTEINS 1 80 - -
Lele29g0374 297 PRINTS Synaptobrevin signature 228 247 IPR001388 GO:0016020|GO:0016192
Lele29g0374 297 PRINTS Synaptobrevin signature 264 283 IPR001388 GO:0016020|GO:0016192
Lele29g0374 297 PRINTS Synaptobrevin signature 208 227 IPR001388 GO:0016020|GO:0016192
Lele29g0374 297 CDD Longin 4 172 IPR010908 -
Lele29g0374 297 ProSitePatterns Synaptobrevin signature. 221 240 IPR001388 GO:0016020|GO:0016192
Lele29g0374 297 FunFam Vesicle-associated membrane protein 7 212 286 - -
Lele29g0374 297 Gene3D - 213 286 - -
Lele29g0374 297 ProSiteProfiles Longin domain profile. 7 79 IPR010908 -
Lele29g0374 297 ProSiteProfiles v-SNARE coiled-coil homology domain profile. 203 263 IPR042855 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele29g0374 Lele-ChrLele29 2286426 2288745 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele29g0374 1 297 Miscellaneous Gene Families AT5G22360 60.403 1.13e-116 333
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele29g0374 29 2286426 2288745 Lele31g1166 31 18198037 18200336 hybridization
Lele29g0374 29 2286426 2288745 Lele32g0359 32 2235664 2237750 hybridization