Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele31g1160 ATGATTATGGCGCCAAGAAAAGCTCGCGAGGGTCAACAGCTCGTGGAGTCCATGTACTCAGTCATTGCACTCCTCTTCCTCCTCGTTACTTGTGTTGAGCTCTGTGACGCCGCCACCGTAGTCGACGTCTACCGCTTGATTCAGTATGATATGTCCGGGGCTCCATTCGGATCTCGACTCGCTAGCCTCAATCACCATGCCGGCTCTCTCCACTTCTCTCCCCATGCTGATCTCTCACGCACTGTGCTCGTGATACCGCTTCGCGAGTTGAACATGACTTTTGTCAAAGAATATATTGTTGAAAAGAAGCCACTGGGGGGCTTATTATTTTTGCTGCCTAAGACCTTCAGTTTAGAAAATAAAGGCGGCATGAGAAGCGATCATCAGGATGATGGTAAGGAGCAGCTGAAGAATGTGTTGGCTGAACTTGAACAGATACTAATACACAACAACTTACCTTACCCTGTTTATTTTGCTTATGAGGATGACAACATCCATGCTGTGTTAGCTGATATAAAGAAAAATGATGCCACTGGCCAACCTGCTACTGCAACTAATGGCGGATACAAGTTTGTTGTTTCAGCTCCCGAGCCAAAGAAAGTCGCATCTCCCACGATTACAAATATTCAGGGATGGTTGGCAGGAAAGAAGACTGATGATGATGCTAGTCAATTACCCACCATTGCTATAGTGGCATCATATGACACTTTTGGGGCTGCTCCTGCATTGTCGGTGGGAAGTGATAGTAATGGAAGTGGTCTTGTGGCTCTCCTTGAAGTAGCCAGGTTGTTTTCTCTCCTGTATTCTAATCCAAAGACAAGAGGACATTACAATATACTCTTCGGACTGACATCTGGTGGGCCATACAACTACAATGGAACTAGTAAGTGGCTTCGCAGCTTCGATCAACGCATGCGTGAAAGCATTGACTACGCTATCTGCTTGAATAGTATTGGCTCATGGGAAAATGATTTGTGGATTCATGTGTCTAAGCCACCAGAAAATGTCTATATAAAGCAAATTTTCGAGGATTTTTCTAGCGTGGCAGAAGAGTTGGGTTTTAATGTTAATCTGAAGCACAAGAAAATAAACATTTCGAATCCTCGAGTAGCTTGGGAGCATGAACAGTTTTCTAGGCTGAGGGTTACCGCCGCCACCCTCTCTGAACTCTCCTCTGCACCTGACGTGCTAGAAAGGACTGGGGGCCTTGTTGACAGCAGGCATTTTGTCAATGAAACAGCAGTTGTCAGAAGTGTGAAGTTAATTGCTGAGAGTCTTGCGAGGCATATCTACAGACATCAAGGAAAGAACATTCAGGTATTCGCAGACAACAGTAGTTTGGCTGTAAATCCTTCTTATATTCGATCGTGGTTAAATGTGTTGTCACGAACACCTCGGGTAGCACCATTTCTGCATAAAGATGATCCTTTTGTGGCAGCACTGAAAAAGGAATTAGAAGATCACACTGACCAGGTTGATCTGCAACGAGATGTGCTAGATGGGATGTTCACTTTCTATGATTCAACTAGGGCAATGCTAAACGTATATCAGGTCGCAAGTGTCACATTTGACCTTCTGTTGCTGTTAGTATTGGGATCATATTTAATTTTGCTCTTCAGCTTCTTGGTCATCACAACTAGGGGCCTTGATGATCTGATCAGCTTATTTCGACGGCCTCCCTCACGAAAAGTGAAGACTGCATAG 1704 0.4472 MIMAPRKAREGQQLVESMYSVIALLFLLVTCVELCDAATVVDVYRLIQYDMSGAPFGSRLASLNHHAGSLHFSPHADLSRTVLVIPLRELNMTFVKEYIVEKKPLGGLLFLLPKTFSLENKGGMRSDHQDDGKEQLKNVLAELEQILIHNNLPYPVYFAYEDDNIHAVLADIKKNDATGQPATATNGGYKFVVSAPEPKKVASPTITNIQGWLAGKKTDDDASQLPTIAIVASYDTFGAAPALSVGSDSNGSGLVALLEVARLFSLLYSNPKTRGHYNILFGLTSGGPYNYNGTSKWLRSFDQRMRESIDYAICLNSIGSWENDLWIHVSKPPENVYIKQIFEDFSSVAEELGFNVNLKHKKINISNPRVAWEHEQFSRLRVTAATLSELSSAPDVLERTGGLVDSRHFVNETAVVRSVKLIAESLARHIYRHQGKNIQVFADNSSLAVNPSYIRSWLNVLSRTPRVAPFLHKDDPFVAALKKELEDHTDQVDLQRDVLDGMFTFYDSTRAMLNVYQVASVTFDLLLLLVLGSYLILLFSFLVITTRGLDDLISLFRRPPSRKVKTA 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele31g1160 567 PIRSF Nicalin 4 562 IPR016574 GO:0009966|GO:0016020
Lele31g1160 567 Pfam Nicastrin 228 365 - -
Lele31g1160 567 ProSitePatterns EF-hand calcium-binding domain. 248 260 IPR018247 -
Lele31g1160 567 CDD M28_nicalin_like 140 431 - -
Lele31g1160 567 Gene3D Zn peptidases 131 430 - -
Lele31g1160 567 SUPERFAMILY Zn-dependent exopeptidases 188 426 - -
Lele31g1160 567 PANTHER NICALIN 14 567 IPR016574 GO:0009966|GO:0016020
Lele31g1160 567 Coils Coil 478 498 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele31g1160 Lele-ChrLele31 18168865 18174502 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele31g1160 7 565 EF-hand Containing Proteins AT3G44330 71.914 0.0 840
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele29g0381 29 2311168 2317035 Lele31g1160 31 18168865 18174502 hybridization
Lele30g1029 30 13666610 13672157 Lele31g1160 31 18168865 18174502 hybridization