Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele29g0381 ATGATTATGGCACCAAGAAAAACTGGCGAGGGTCAACAGCTCGTGGAGTCCATGTACTCAGTCATTGCACTTCTCTTCCTCATCGTCACTTGCGTTGAGCTCTGTGACGCCGCCACCGTAGTCGACGTCTACCGCTTGATTCAGTATGATATGTCCGGGGTTCCATTCGGATCTCGACTCGCTAGCCTCAATCACCATGCCGGCTCTCTCCACTTCTCTCCCCATGCTGATCTCTCACGCACTGTGCTCGTGATACCGCTTCGCGAGTTGAACATGACTTTTGTCAAAGGCGGCATGAGAAGTGATCATCAGGATGATGGTAAGGAGCAGCTGAAGAATGTGTTGGCTGAACTTCAACAGATACTAATGCACAACAACTTACCTTACCCTGTTTATTTTGCTTATGAGGATGACAACATCCATGCTGTGTTAGCTGATATTAAGAAAAATGATGCCACTGGCCAACCTGCTACTGCAACTAATGGCGGATACAAGTTTGTTGTTTCAGCTCCAGAGCCAAAGAAAGTTGCATCTCCCACGATTACAAATATTCAGGGATGGTTGGCAGGAAAGAAGACAGATGATGATGCTAGTCAATTACCCACCATTGCTATAGTGGCATCATATGACACTTTTGGGGCTGCTCCTGCATTGTCGGTGGGAAGTGATAGTAATGGAAGTGGTCTTGTGGCTCTCCTTGAAGTAGCTAGGTTGTTTTCTCTCCTGTATTCTAATCCAAAGACAAGAGGACATTACAATATACTCTTTGGACTGACATCCGGTGGGCCATACAACTACAATGGAACTAGTAAGTGGCTTCGCAGCTTCGATCAACGCATGCATGAAAGCATTGACTACGCTATCTGCTTGAATAGTATTGGCTCATGGGAAAATGATTTGTGGATTCATGTGTCTAAGCCACCAGAAAATGTCCATATAAAGCAAATTTTTGAGGATTTTTCTAGCGTGGCAGAAGAGTTGGGTTTTAATGTTAATCTGAAGCACAAGAAAATAAACATTTCGAATCCTCGAGTAGCTTGGGAGCATGAACAGTTTTCTAGGCTGAGAGTTACTGCCGCCACCCTCTCTGAACTCTCCTCTGCACCTGACTTGCTAGAAAGGACTGGGGGCCTTGTTGATAGCAGGCATTTTGTCAATGACACAGCAGTTGTCAGAAGTGTGAAGTTAATTGCTGAGAGTCTTGCGGCATATCTACAGACATCAAGGAAAGAACATTCAGGTAGATCAGCTGAGGAATTAGAAGATCACACTGACCAGGTTGATCTGCAACGAGATGTGCTAGATGGGATGTTCACTTTCTATGATTCAACTAGAGCAGTGCAAAACGTATATCAGGTCGCCAGTGTTACATTTGACCTTCTGTTGCTGTTAGTATTGGGATCATATTTAATTTTGCTCTTCAGCTTCTTGGTCATCACAACTAGGGTATCTATCCGTTTCTTACTTAACATCAGTTTGCAAAATTTAATACAAAGCTTAGCCTGTGTACTCATTGTTGGTGATGCTGTTAATCAGGGCCTTGATGATCTGATCAGCTTATTTCGACGGCCTCCCTCACGAAAAGTGAAGACTGCATAG 1599 0.4428 MIMAPRKTGEGQQLVESMYSVIALLFLIVTCVELCDAATVVDVYRLIQYDMSGVPFGSRLASLNHHAGSLHFSPHADLSRTVLVIPLRELNMTFVKGGMRSDHQDDGKEQLKNVLAELQQILMHNNLPYPVYFAYEDDNIHAVLADIKKNDATGQPATATNGGYKFVVSAPEPKKVASPTITNIQGWLAGKKTDDDASQLPTIAIVASYDTFGAAPALSVGSDSNGSGLVALLEVARLFSLLYSNPKTRGHYNILFGLTSGGPYNYNGTSKWLRSFDQRMHESIDYAICLNSIGSWENDLWIHVSKPPENVHIKQIFEDFSSVAEELGFNVNLKHKKINISNPRVAWEHEQFSRLRVTAATLSELSSAPDLLERTGGLVDSRHFVNDTAVVRSVKLIAESLAAYLQTSRKEHSGRSAEELEDHTDQVDLQRDVLDGMFTFYDSTRAVQNVYQVASVTFDLLLLLVLGSYLILLFSFLVITTRVSIRFLLNISLQNLIQSLACVLIVGDAVNQGLDDLISLFRRPPSRKVKTA 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele29g0381 532 SUPERFAMILY Zn-dependent exopeptidases 163 367 - -
Lele29g0381 532 PANTHER NICALIN 418 532 IPR016574 GO:0009966|GO:0016020
Lele29g0381 532 CDD M28_nicalin_like 115 404 - -
Lele29g0381 532 ProSitePatterns EF-hand calcium-binding domain. 223 235 IPR018247 -
Lele29g0381 532 Pfam Nicastrin 203 339 - -
Lele29g0381 532 Gene3D Zn peptidases 107 367 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele29g0381 Lele-ChrLele29 2311168 2317035 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele29g0381 3 530 EF-hand Containing Proteins AT3G44330 58.893 0.0 666
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele29g0381 29 2311168 2317035 Lele31g1160 31 18168865 18174502 hybridization
Lele29g0381 29 2311168 2317035 Lele32g0363 32 2260633 2266212 hybridization