Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele30g1029 ATGATTATGGCTCCAAGAAAAGCTCGCGAGCGTCAACTGCTCGTGGAGTCCATGTCCTCAGTCATTGCACTCCTCTTCCTCCTCGTTACTTGCGTTGAGCTCTGCGACGCCGCCACCGTAGTTGACGTCTTCCGCCTGATTCAGTATGATATGTCCGGGACTCCATTCGGATCTCGACTCGCTAGCCTCAATCACCATGCCGGCTCTCTCCATTTCTCTCCCCACGCTGATCTCTCACGCACAGTGCTCGTGATACCGCTTCGCGAGTTGAACATGACTTTTGTCAAAGAATATATCGTTGAAAAGAAGCCACTGGGGGGCTTATTGTTTTTGCTGCCTAAGACGTTCAGTGTAGAAAATAAAGGCGGCATGAGAAGTGATCATCAAGATGATGGTAAGGAGCAGCTGAAGAATGTGTTGGCTGAACTTGAACAGATACTAATACACAACAACTTACCTTACCCTGTTTATTTTGCTTATGAGGATGACAACATTCATGCTGTGTTAGCTGATATAAAGAAAAATGATGCCACTGGCCAACCTGCTACTGCAACTAATGGCGGATTCAAGTTTGTTGTTTCAGCTCCAGAGCCAAAGAAAGTCGCGTCTCCCACAATTACAAATATTCAGGCATGGTTGGCGGGAAAGAAGACAGATGATGATGCTAGTCAATTACCCACCATTGCTATAGTGGCATCATATGACACTTTTGGGGCTGCTCCTGCATTGTCAGTGGGAAGTGATAGTAATGGAAGTGGTGTTGTGGCTCTTCTTGAAGTAGCTAGGTTGTTTTCTCTCCTTTATTCTAATCCAAAGACCAGAGGACATTTCAATCTACTCTTTGGACTGACATCTGGTGGGCCATACGACTACAATGGAACTCGTAAGTGGCTTCGCAGCTTTGATCAACGCATGCGTGAAAGCATTGACTATGCTATCTGCTTGAATAGTATTGGCTCGTGGGAAAATGATTTGTGGATTCATGTGTCTAAGCCACCAGAAAATGTCTATATAAAGCAAATTTTCCAAGATTTTTCTAGCGTGGCAGAAGAGTTGGGTTTTAATGTTAATCTGAAGCACAAGAAAATAAATATTTCGAATCCTCGAGTAGCTTGGGAGCATGAACAGTTTTCTAGGCTGAGAGTTACTGCTGCCACCCTCTCTGAACTCTCCACTGCACCTGACTTGCTTGAAAGGACTGGGGGCCTTGTTGACAGCAGGCATTTTGTCAATGAAACAGCAGTTCTCAGAAGTGTGAAGTTGATTGCTGAGAGTCTTGTGAGGCATATCTACAGACATCAAGGAAAGAACATTCAGGTATTCGCAGACAACAGTAGTTTGGCTGTAAATCCTTCTTATATTCGATCGTGGTTGAATGTGTTGTCACAAACACCTCGGATGGCACCATTTCTGCAAAAAGATGATCCTTTTGTTGCAGCACTGAAAAAGGAATTAGAAGATCACACTGACCAGGTTGATCTGCAACGAGATGTGCTAGATGGGATGTTCACTTTCTATGATTCAACTAGGGCAATGCTAAACGTATATCAGGTCGCCAGTGTCACATTTGACCTTCTGTTGCTGTTAGTATTGGGATCATATTTAATTTTGCTCTTCAGCTTCTTGGTCATCACAACAAGGGGCCTTGATGATCTGATCAGCTTATTTCGACGGCCTCCCTCACGAAAAGTGAAAACTGCATAG 1704 0.4425 MIMAPRKARERQLLVESMSSVIALLFLLVTCVELCDAATVVDVFRLIQYDMSGTPFGSRLASLNHHAGSLHFSPHADLSRTVLVIPLRELNMTFVKEYIVEKKPLGGLLFLLPKTFSVENKGGMRSDHQDDGKEQLKNVLAELEQILIHNNLPYPVYFAYEDDNIHAVLADIKKNDATGQPATATNGGFKFVVSAPEPKKVASPTITNIQAWLAGKKTDDDASQLPTIAIVASYDTFGAAPALSVGSDSNGSGVVALLEVARLFSLLYSNPKTRGHFNLLFGLTSGGPYDYNGTRKWLRSFDQRMRESIDYAICLNSIGSWENDLWIHVSKPPENVYIKQIFQDFSSVAEELGFNVNLKHKKINISNPRVAWEHEQFSRLRVTAATLSELSTAPDLLERTGGLVDSRHFVNETAVLRSVKLIAESLVRHIYRHQGKNIQVFADNSSLAVNPSYIRSWLNVLSQTPRMAPFLQKDDPFVAALKKELEDHTDQVDLQRDVLDGMFTFYDSTRAMLNVYQVASVTFDLLLLLVLGSYLILLFSFLVITTRGLDDLISLFRRPPSRKVKTA 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele30g1029 567 Gene3D Zn peptidases 130 418 - -
Lele30g1029 567 Pfam Nicastrin 228 365 - -
Lele30g1029 567 ProSitePatterns EF-hand calcium-binding domain. 248 260 IPR018247 -
Lele30g1029 567 CDD M28_nicalin_like 140 431 - -
Lele30g1029 567 Coils Coil 478 498 - -
Lele30g1029 567 SUPERFAMILY Zn-dependent exopeptidases 161 411 - -
Lele30g1029 567 PIRSF Nicalin 3 562 IPR016574 GO:0009966|GO:0016020
Lele30g1029 567 PANTHER NICALIN 10 567 IPR016574 GO:0009966|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele30g1029 Lele-ChrLele30 13666610 13672157 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele30g1029 7 565 EF-hand Containing Proteins AT3G44330 71.377 0.0 836
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele30g1029 30 13666610 13672157 Lele31g1160 31 18168865 18174502 hybridization
Lele30g1029 30 13666610 13672157 Lele32g0363 32 2260633 2266212 hybridization