Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele31g1133 ATGGGAAAGAATCATAAGTCGGACCTAGGGAGGTCTTTGGTGAAGCAGCACAACCAGATGATCCAGCAGAGTAAGGAAAAGGGTCTGTTCTACAAGAATCAGCAGAAGAAGATTTTGGAATCGGTCACAGAGGTCACCGACATTGATGCCATCATCGAACAAGCAGACGAAGCCGAGCGTCTCTTCGTCGGCAAGAACCCCGCCCCTGACCTCCCCATTAGTCTGGATGCAAGCTCTAGCACTAGTGAATTGACTCCTGAAGAGAGGAGAGATCTTCAGAAGAGAGAGGAGGCGCTGCATGCTGGCAGTCTCCGAGTTCCACGCAGGCCGCCATGGAGTGCGAATATGTCCGTGGAGGAGCTTGATGCTAATGAAAGACAAGCTTTCTTAACTTGGCGTCGCAGCCTAGCAAGACTTGAGGAAAATGAGAAGCTTGTCCTTACACCTTTTGAGAAGAATCTTGATATTTGGAGACAGCTTTGGCGAGTTGTTGAGCGTAGTGATTTGCTTGTGATGGTTGTTGATTCGCGAGATCCACTCTTTTACCGCTGTCCTGATCTTGAGGCATATGGAAGGGAGGTTGATGAGCATAAACTGACGTTGCTGCTGGTTAACAAGGCAGATCTTTTGCCCACTCCTATCAGAGAGAGATGGGCAGAGTACTTCCGGTCCCATGATATTCTCTTCATCTTCTGGTCAGCTAAAGCTGCTTCTGCAGCTCTGGAAGGCAAAAAGCTTCCTTCGTCATTGGATGCTGATAATTCGAAGAAGTCCAGTAACCCAGATACGAAAATATATGGCAGAGATGAGCTCCTGGCTCGGTTACAGTCAGAAGCAGAAGAGATTGTAGAGAGGAGGAGAAAATCAAGCTCCTCTGGCACAGGGCCTTCTGATATTCAGTCTTGTAGTGAAAATGCTTCTGGCAGTTCGTCATCAAGTAATGTCATTGTGGGATTTGTTGGTTATCCTAATGTGGGTAAAAGTTCTACTATCAATGCTTTGGTAGGCCAAAAACGGACAGGTGTCACCTCCACTCCAGGGAAGACAAAGCACTTCCAAACGTTAATAATTTCTGATAGGCTAACCCTTTGTGACTGTCCTGGGTTAGTTTTCCCGTCTTTTTCAAGCTCAAGATATGAGATGATTGCCTGTGGGGTGCTGCCCATTGATAGGATTACTGAACACAGGGAAGCTGTCCAGGTTGTGGCCGATAAAGTCCCAAGACATGTCATTGAGGAAGTTTATAGGATCACCCTTCCAAAGCCTAAGCCATATGAACCCCAATCTAGGCCTCCTCTGGCATCCGAACTTCTGAGAACTTATTGCGCTTCTCGTGGGTATGTTGCCTCTAGTGGACTACCTGATGAAACTAGAGCTGCCCGTCAGATACTGAAAGATTACATCGACGGAAAGTTGCCTCATTATGAAATGCCCCCTGGAACGTTGATTGAGGAGCAAGCTGTGGCCAAGCCCGGAGGACTTGACTCAGTTAACTTAAACAAGTCAGATTCTTCTCTCATTGAAAATTCTTCAGATGTCGAGAGTGAAATCGCAACTAATCTTGAGCACGTCCTGGATGATCTCAATTCATTTGACATGGCTAATGACCTTGCTCCAAAGAAAGGTACTGTCAAGAAGACTAATGCTTCCCACAAACATCATAAGAAGCCTCAGAGGAAAAAAGATCGTTCATGGAGAGTAGGAAATGATGATGATGATGATGGTATGCCAGTTGCCAGATTCTTTCAGAAACCAGTAAATACAGGTCCAATGGGAGTCAGATAA 1785 0.4622 MGKNHKSDLGRSLVKQHNQMIQQSKEKGLFYKNQQKKILESVTEVTDIDAIIEQADEAERLFVGKNPAPDLPISLDASSSTSELTPEERRDLQKREEALHAGSLRVPRRPPWSANMSVEELDANERQAFLTWRRSLARLEENEKLVLTPFEKNLDIWRQLWRVVERSDLLVMVVDSRDPLFYRCPDLEAYGREVDEHKLTLLLVNKADLLPTPIRERWAEYFRSHDILFIFWSAKAASAALEGKKLPSSLDADNSKKSSNPDTKIYGRDELLARLQSEAEEIVERRRKSSSSGTGPSDIQSCSENASGSSSSSNVIVGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTKHFQTLIISDRLTLCDCPGLVFPSFSSSRYEMIACGVLPIDRITEHREAVQVVADKVPRHVIEEVYRITLPKPKPYEPQSRPPLASELLRTYCASRGYVASSGLPDETRAARQILKDYIDGKLPHYEMPPGTLIEEQAVAKPGGLDSVNLNKSDSSLIENSSDVESEIATNLEHVLDDLNSFDMANDLAPKKGTVKKTNASHKHHKKPQRKKDRSWRVGNDDDDDGMPVARFFQKPVNTGPMGVR 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele31g1133 594 FunFam Large subunit GTPase 1 156 373 - -
Lele31g1133 594 Gene3D - 376 478 IPR023179 -
Lele31g1133 594 PRINTS GTP1/OBG GTP-binding protein family signature 317 337 IPR006073 GO:0005525
Lele31g1133 594 PRINTS GTP1/OBG GTP-binding protein family signature 363 378 IPR006073 GO:0005525
Lele31g1133 594 MobiDBLite consensus disorder prediction 289 312 - -
Lele31g1133 594 PANTHER LARGE SUBUNIT GTPASE 1 HOMOLOG-RELATED 1 566 IPR043358 GO:0003924
Lele31g1133 594 MobiDBLite consensus disorder prediction 283 312 - -
Lele31g1133 594 Pfam 50S ribosome-binding GTPase 317 373 IPR006073 GO:0005525
Lele31g1133 594 MobiDBLite consensus disorder prediction 563 578 - -
Lele31g1133 594 FunFam Large subunit GTPase 1 377 478 - -
Lele31g1133 594 MobiDBLite consensus disorder prediction 72 92 - -
Lele31g1133 594 Gene3D - 156 373 IPR027417 -
Lele31g1133 594 MobiDBLite consensus disorder prediction 541 594 - -
Lele31g1133 594 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 155 407 IPR027417 -
Lele31g1133 594 MobiDBLite consensus disorder prediction 545 562 - -
Lele31g1133 594 CDD HSR1_MMR1 156 372 - -
Lele31g1133 594 ProSiteProfiles Circularly permuted (CP)-type guanine nucleotide-binding (G) domain profile. 157 372 IPR030378 GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele31g1133 Lele-ChrLele31 17956624 17959420 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele29g0412 29 2523704 2527586 Lele31g1133 31 17956624 17959420 hybridization
Lele30g0999 30 13445569 13448472 Lele31g1133 31 17956624 17959420 hybridization