Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele31g1019 ATGCACCAAATAGTTTCGATGGCTGATCAAGAGAACAATGATATTGGGGCTGCAGACACCTTCGCTCCGGTGCTCGAGGATTGTTCCTTCGATGGGTCGGATCGAAATCCAGTTGTGTCTAATGGCGTAGGGAAGGTGGAGGAGAGAGCCGGGTGTGAAAATTTGGGGATTTCGAGTTGTACGGTTGAGCAAGAAATGAGAAATGGTGCTGAGCCAATTGCTATGGAATCCACTCTTATTGAGGAATGGATAGGAAGTATTAGTTTAGCTGGCGGGCTTCAAAGTTCTGAGCAGGAAATGAGAAACAGTGCTGAGCCAATTGCTCTGGAATCTACTTCTATCGTGGAGATGGATGATGAAGTGCGTGAAAAATTGGAGGTTTCGGGTTGTAACAGTAATACTGAGGAAGGGGTGGGAAGTATTAGTTTGGTTAGTGGGCTTGGAAGCTCTCTTATAATTGGAAATAATGATGGAAAGAGTGAGATTAAGATGGATGAGGATGAGAGTGAAAGTTCAGAGTCCGAGAGTCATAATCCATCTTCACCAACATCTGCATCTTCTAGTAGTAGTAGTGATAGTGACGATAGTTCTACTAGTGGTGGTTCTAATGATGATGACGATAGTGAAGATAGTGAGGAAGAGGAACATCAGGAAGAAGAAAAAATGACAGAAAAGATTCAAGTGGAAGTTGAAGAAGGTGAGATAAAAGACTCTGATGGGCAAGAGCTTGGTACTGACAGTGCCGTCAGTGATGATGAAGATGCAGATGAGGATGCAGGGGAGGTTTCTTGGAGTGGCATTAATGATGAAGGTGATGAAGACGAACCTGCTATGGAAGGACCCATCAGGTCAAAGAACGAGCTCAAGGATCTTCCTTCTGTTCCTCCAGTAAATGTGACCATACAACCTCACCATCAAATGCTGCCAGTAGGAGTTGTTATGTCGATAATCAGCTCCCAAGTCATTGTGGAAGGGATGGAGAAGCATGATCCTCTTAATGAGGGGTCCATTCTCTGGATAACTGAAACCCGAACGCCACTGGGGTTGGTTGATGAAATCTTTGGTCCTGTCAAAAACCCTTACTATATTGTGAGATACAATTCTGAAAATGAAATCCCCAAGGGTGTCCATGTGGGTACTTCAATCTCTTTTGTTTGGGAATTCGCCGATCATGTACTTAATAACAAGGATCTTTACAAGAAAGGCTATGATGCTTCTGGTTTGAATGATGAAGAGTTGTCGGATGAAGCGGAGTTTTCCGATGATGAGAAAGAGGTGGAATACAGGAAAATGCAAAAAATGATGAAGAGAGGTATTAGTGATCAGAATCATGGAAAGCATAAGAACAACAAAAAGAAGGCTTCAAGGAAAAATGGCCCGGCAGCACCTCCCTACCCTGTCCCATCTGCTTCTTCAACGCATAATCATCAAAGGTTTCCTCCTCCATTTTCAGGCATCAGACCAGGTCCTTTCGAGGCGGCAGCTTCGACCGTTCCACCATTTCCACCTACAAATCCCAGCCCTAATTTAGCTTCAAACGGAATTTGGACAAATGGGACATCACTTATGCAGCCACAAACTGCTCTCCCTAATGGATTTCCTCCTAATAACATATCTTTGTTCCCAGGAAATGCACAAAATCCTTATCAGTTGCCAATGACAGGAATCCCATTTCATCAACAGTTAGGCCCCACTCTAGGATCGCTTCCACTTCCAGGAACCAGCTTGCCTATAGTACCACCCAATACATTTGTACAACCTATGTACCTACAGGGTCTTGTTGGTCAAAATCAAATGACTTTTGGGATGAATTTCCCGCCGATTCAGGCATCTGTAAGTGGTGGTGGTGAACAAGCTTTTTTACCCTACGGAATGCAACCAGAAAGAAATCATAATTTTCAGTCAGATTCTGTGAATCTCCATGCTCCCAATCAATTTAGACCTGGTGGCTCTGCTAATCGTGGAAGGAAAACCTTTCACCAAAGGGGAAGGAAAGGCTGGCGACCAACAAAGTAA 2016 0.4395 MHQIVSMADQENNDIGAADTFAPVLEDCSFDGSDRNPVVSNGVGKVEERAGCENLGISSCTVEQEMRNGAEPIAMESTLIEEWIGSISLAGGLQSSEQEMRNSAEPIALESTSIVEMDDEVREKLEVSGCNSNTEEGVGSISLVSGLGSSLIIGNNDGKSEIKMDEDESESSESESHNPSSPTSASSSSSSDSDDSSTSGGSNDDDDSEDSEEEEHQEEEKMTEKIQVEVEEGEIKDSDGQELGTDSAVSDDEDADEDAGEVSWSGINDEGDEDEPAMEGPIRSKNELKDLPSVPPVNVTIQPHHQMLPVGVVMSIISSQVIVEGMEKHDPLNEGSILWITETRTPLGLVDEIFGPVKNPYYIVRYNSENEIPKGVHVGTSISFVWEFADHVLNNKDLYKKGYDASGLNDEELSDEAEFSDDEKEVEYRKMQKMMKRGISDQNHGKHKNNKKKASRKNGPAAPPYPVPSASSTHNHQRFPPPFSGIRPGPFEAAASTVPPFPPTNPSPNLASNGIWTNGTSLMQPQTALPNGFPPNNISLFPGNAQNPYQLPMTGIPFHQQLGPTLGSLPLPGTSLPIVPPNTFVQPMYLQGLVGQNQMTFGMNFPPIQASVSGGGEQAFLPYGMQPERNHNFQSDSVNLHAPNQFRPGGSANRGRKTFHQRGRKGWRPTK 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele31g1019 671 MobiDBLite consensus disorder prediction 626 671 - -
Lele31g1019 671 MobiDBLite consensus disorder prediction 150 280 - -
Lele31g1019 671 MobiDBLite consensus disorder prediction 199 217 - -
Lele31g1019 671 MobiDBLite consensus disorder prediction 657 671 - -
Lele31g1019 671 MobiDBLite consensus disorder prediction 175 198 - -
Lele31g1019 671 MobiDBLite consensus disorder prediction 218 241 - -
Lele31g1019 671 MobiDBLite consensus disorder prediction 628 646 - -
Lele31g1019 671 SUPERFAMILY Translation proteins 307 376 IPR009000 -
Lele31g1019 671 FunFam H/ACA ribonucleoprotein complex non-core subunit NAF1 279 385 - -
Lele31g1019 671 Pfam Gar1/Naf1 RNA binding region 308 385 IPR007504 GO:0001522|GO:0042254
Lele31g1019 671 PANTHER H/ACA RIBONUCLEOPROTEIN COMPLEX NON-CORE SUBUNIT NAF1 241 604 IPR040309 GO:0000493|GO:0003723|GO:0005732|GO:0042254
Lele31g1019 671 MobiDBLite consensus disorder prediction 436 491 - -
Lele31g1019 671 Gene3D Probable tRNA pseudouridine synthase domain 279 385 IPR038664 -
Lele31g1019 671 MobiDBLite consensus disorder prediction 246 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele31g1019 Lele-ChrLele31 17215830 17218474 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele29g0526 29 3186115 3188716 Lele31g1019 31 17215830 17218474 hybridization
Lele30g0887 30 12757065 12759655 Lele31g1019 31 17215830 17218474 hybridization