Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele30g0887 ATGGCTGATCGAGAGAACAATGATATTGGGGCTGCAGACACCTTCGCTCCGGTGCTCCATGATTGTTTCTTCGACGGGTCGGTTCTAAATCCTGTTGTGTCTAATGGCGTAGGGAAGGTGGAGGAGAGAGCCGAGTGTGAAAATTTGGGAGTTTCGAGTTGTACGGGTGAGCAAGAAATGAGAAACGGTGCCGAGCCAATTGCTATGGAATCTACTCTTATTGAGGAATGGATAGGAAGTATTAGTTTAGCTGGCGGGCTTCAAAGTTCTGAGCAGGAAATGAGAAACGGTGCTGAGCCTGCTTCTATCGTGGAAGTGGATGGTGAAGTGAGTGAAAAATTGGAGGTTTCGGGTTGTAACAGTAATATTGAGGAAGGGGTGGGAAGTACTCGTTTGGTTAGTGGGCTTGGAAGCTCTGTTATAATTGGAATGAATGATGGGAAGAGTGAGATTAAGATGGTTGAGGATGAGAGTGAAGATTCAGAGTCCGAGAGTGATAATCCGTCTTCACCAACATCTGCATCTTCTAGTAGTAGCAGTGACAGTGACGATAGTTCTACTAGTGGTGGCTCTAGTGATGATGACGATAGTGAAGATAGTGAGGAAGAGGACCATCAGAAAGAAGAAAAAATGACAAAAAAGATTGAAGTGGAAGTTGAAGAAGGTGAAATAAAAGACTCTGATGGGCAAGAGCTTGAAACTGACAGGGCCGTCAGTGATGTTGAAGATGCAGGGGAGGTTTCTTGGAGTGGAATTAATGATGGAGATGGCACTGCTATGGAAGGACCCATCAGGTCAAAGAACGAGCTCAAGGATCTTCCTTCTGTTCCTCCGGTAAATGTGACCATAGAACCACACCATCAAATGCTGGCAGTAGGAGTTGTTATGTCGATAATCAGCTCCCAAGTCGTTGTGGAAGGGACGGAGAAGCACGATCCTCTTAATGAGGGTTCCATTCTCTGGATAACTGAAACCCGAAAACCACTAGGGTTGGTTGATGAAATCTTCGGACCTGTCAAAAACCCTTACTATATTGTGAGATACAATTCTGAAAATGAAATCCCCAAGGGTGTCCATGTGGGCACTTCGATCTCTTTTGTTCGGGAATTTGTCGATCATGTGCTTAATAACAAGGATCTTTACAAGAAAGGTTATGATGCTTCCGGTTTGAACGATGAAGAGTTGTCTGATGAAGCCGAGTTTTCCGACGATGAGAGAGAGGCAGAATACAGAAAAATGCAAAAGATGATGAAGAGAGGTATTAGTGATCAGAATCATGGAAAGCATAAAAACGACAAAAAGAAGGCTTCAAGGAAAAATGGCCCGGCAGCACCTCCCTACCCCGTCCCATCTGCTTCTTCAACGCATAATCATCAAAAGTTTCCTCCTCCATTTTCCGGCATCAGACCAGGTCCTTTCGAGGCGGTATCTTCGACTGTTCCGTCATTTCCACCTGCAAATCCTGGCCCTAATTTAGCTTCAAACGGAGTTTGGACAAATGGGATATCGCTTATGCAGCCACAAACTTTTCTGCTTCCTAATGGTTTTCCTCCTAATGAAATGTCTTTGTTCCCAGGAAATGCACAAAATCCTTATCAATTGGCAATGACAGTACTCCCATTTCAACAACAGTTAGGCCCCAATCTAGGATCGCTTCCACTTCCAGGAACCAGCTTGCCTGTAGTACAACCCAATATATTTTCACAACCTATGTTCCCACAGGGTCTTGTTGGTCAAAATCAAAGGACATTTGGGATGAATGTCCCGCAGATTCAGGCATCTGTAAGTGGTGGTGGTGAACAAACTTTTTTGCCCTACGGAATGCAAGCAGAGAGAAATCATAATTTTCAGTCGCGTCCTGTGAATCCCCATGCTCCCAATCAATTTAGACCCGGTGGCTCTGGTAATCGTGGAAGGAAAAACTTTTACCAAAGGGTAAGGAAAGGCTGGCGGCCATCTACAAAGTAA 1968 0.4472 MADRENNDIGAADTFAPVLHDCFFDGSVLNPVVSNGVGKVEERAECENLGVSSCTGEQEMRNGAEPIAMESTLIEEWIGSISLAGGLQSSEQEMRNGAEPASIVEVDGEVSEKLEVSGCNSNIEEGVGSTRLVSGLGSSVIIGMNDGKSEIKMVEDESEDSESESDNPSSPTSASSSSSSDSDDSSTSGGSSDDDDSEDSEEEDHQKEEKMTKKIEVEVEEGEIKDSDGQELETDRAVSDVEDAGEVSWSGINDGDGTAMEGPIRSKNELKDLPSVPPVNVTIEPHHQMLAVGVVMSIISSQVVVEGTEKHDPLNEGSILWITETRKPLGLVDEIFGPVKNPYYIVRYNSENEIPKGVHVGTSISFVREFVDHVLNNKDLYKKGYDASGLNDEELSDEAEFSDDEREAEYRKMQKMMKRGISDQNHGKHKNDKKKASRKNGPAAPPYPVPSASSTHNHQKFPPPFSGIRPGPFEAVSSTVPSFPPANPGPNLASNGVWTNGISLMQPQTFLLPNGFPPNEMSLFPGNAQNPYQLAMTVLPFQQQLGPNLGSLPLPGTSLPVVQPNIFSQPMFPQGLVGQNQRTFGMNVPQIQASVSGGGEQTFLPYGMQAERNHNFQSRPVNPHAPNQFRPGGSGNRGRKNFYQRVRKGWRPSTK 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele30g0887 655 Pfam Gar1/Naf1 RNA binding region 291 366 IPR007504 GO:0001522|GO:0042254
Lele30g0887 655 MobiDBLite consensus disorder prediction 616 655 - -
Lele30g0887 655 FunFam H/ACA ribonucleoprotein complex non-core subunit NAF1 261 367 - -
Lele30g0887 655 MobiDBLite consensus disorder prediction 204 221 - -
Lele30g0887 655 SUPERFAMILY Translation proteins 290 358 IPR009000 -
Lele30g0887 655 MobiDBLite consensus disorder prediction 153 271 - -
Lele30g0887 655 MobiDBLite consensus disorder prediction 165 187 - -
Lele30g0887 655 MobiDBLite consensus disorder prediction 188 203 - -
Lele30g0887 655 Coils Coil 144 164 - -
Lele30g0887 655 MobiDBLite consensus disorder prediction 418 473 - -
Lele30g0887 655 Gene3D Probable tRNA pseudouridine synthase domain 261 368 IPR038664 -
Lele30g0887 655 PANTHER H/ACA RIBONUCLEOPROTEIN COMPLEX NON-CORE SUBUNIT NAF1 68 582 IPR040309 GO:0000493|GO:0003723|GO:0005732|GO:0042254
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele30g0887 Lele-ChrLele30 12757065 12759655 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele30g0887 30 12757065 12759655 Lele31g1019 31 17215830 17218474 hybridization
Lele30g0887 30 12757065 12759655 Lele32g0503 32 3147436 3150028 hybridization