Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele31g0230 ATGGATGGGTATGAAGCTACAAGAATTGTTTTCTCACGGATCCAAAACTTGGACCCTGAGAATGCTTCCAAAATCATGGGTCTGCTTCTGATTCAAGACCATGGTGAGAAAGAAATGATTAGATTAGCATTTGGTCCTGAAGCTCTGGTTCACTCTGTGATTGTCAAAGCTCGCAAAGACTTGGGATTATCCTCGTACTCTCCGTCTACGCCTTCAACTCCTCCTCCATCTTCTTTCCTTTCAAGGCAAAATTCTACTCCTTCAAGGCTAAGCAACACTGGAGTCAACTTTCCTCCTCCTGCTCTTACAATCCCAAACCCCTCCTCTTCTTCAGCGTTTTGGGCTGATAATTTGATGAGCCCAAACAACAATTTACTTGTTGGCTCTAATTCTCCTCATGTCAACGTTCCTTCACCATCTTCTTCCTTACCCTTTTATGGGTCTGATCCTATTGACGAGTTTCAACTTCAGGACCAGCTTTCTTTCCTCAATGATGGGTCCCCTACCCTTGGCAGGAAAAACCCAGATATGTTCTATCCCCAATCTGACTTATCTTCGAGTCCTACCGGCGGCGACGCCACCGGTTTTCCCTCTTATGGGTGGGGCGGGTCAGTCCATCGCCGGAGTTGCTCAGTCAATGAAGCTTGTTTGGGGTCTGAGGATCCGAATTCTGGGTTGGGTTGGAAGCCTTGTCTTTACTTTGCTAGAGGGTATTGTAAAAACGGTACTAGCTGTAGGTTCCTTCATGGAGGAGGAATTGGAGATTCTGAAGGCGTTTCAATGGTTGGGTCTCCTAGTAAGATTGAGATAATGGACCAGAGCAGCCATGAGCTTCTCAGATCTAAAACTGCTCAACAGCAAAGATTGCTCATGGCTTCTTCTTTGCCTTACTCTCCAAAAGGCATGAATTTTCTACTACAACAGCAGCAAAATGATACCCTGAGAGCTGCAGCTGCACTTATGACGAACGAGGATTTGCACAGGTTTGGGCGATCCAGGCTTGAAAGAAACGATTTTTCATTCAATGGAGGTTCTGGAATAGGAAACCCAGCTTCGAGGCAGATCTACTTGACCTTTCCAGCTGATAGTACTTTCAGAGAGGAAGATGTTTCAAATTACTTCAGCATTTATGGTCCTGTTCAAGATGTAAGGATTCCATACCAGCAGAAGCGAATGTTCGGATTTGTGACCTTTGTTTATCCAGAGACCGTAAAGCTCATTCTGTCAAAGGGAAACCCCCATTTCGTTTGTGATGCTCGCGTACTAGTCAAGCCTTACAAGGAAAAAGGCAAAGTCCCAGACAAGAAACAAGTTGAAAGGGGTGATTTCTCACCATGTGGTACTCCTACTGGACTTGATGCTAGAGATCCGTTTGATCTTCAACTTGGAGGGAGAATGTACTACAATACTCAAGATATGCTGTGGAGGAGGAAGTTGGAGGAGCAAACTGATTTGCAGCAAGCTATTGAGCTCCAAAGTAGGAGGCTCATGGGTCTACAACTTCTTGACATCAAGAAACAGCATCAGAGGGCGTTTTCAACTGGAAGCCCAATTCCTTCCCCTACTCAATCTCCCAACATGTTCAATCAGAATCTTGTTCTTCCTTCCTTTCATAGTGGCAACTCTGAGGCTTCTCTGGAGGAGAGTGTTTTGAGCTCTGCTCCTCCTACTAGCTCGGCATCGATTTCTGTTGCTCAGCAGCCACCAATGCAGCCAAAGTGA 1722 0.4559 MDGYEATRIVFSRIQNLDPENASKIMGLLLIQDHGEKEMIRLAFGPEALVHSVIVKARKDLGLSSYSPSTPSTPPPSSFLSRQNSTPSRLSNTGVNFPPPALTIPNPSSSSAFWADNLMSPNNNLLVGSNSPHVNVPSPSSSLPFYGSDPIDEFQLQDQLSFLNDGSPTLGRKNPDMFYPQSDLSSSPTGGDATGFPSYGWGGSVHRRSCSVNEACLGSEDPNSGLGWKPCLYFARGYCKNGTSCRFLHGGGIGDSEGVSMVGSPSKIEIMDQSSHELLRSKTAQQQRLLMASSLPYSPKGMNFLLQQQQNDTLRAAAALMTNEDLHRFGRSRLERNDFSFNGGSGIGNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKLILSKGNPHFVCDARVLVKPYKEKGKVPDKKQVERGDFSPCGTPTGLDARDPFDLQLGGRMYYNTQDMLWRRKLEEQTDLQQAIELQSRRLMGLQLLDIKKQHQRAFSTGSPIPSPTQSPNMFNQNLVLPSFHSGNSEASLEESVLSSAPPTSSASISVAQQPPMQPK 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele31g0230 573 SUPERFAMILY RNA-binding domain, RBD 364 443 IPR035979 GO:0003676
Lele31g0230 573 SMART rrm1_1 354 424 IPR000504 GO:0003723
Lele31g0230 573 SMART c3hfinal6 227 251 IPR000571 GO:0046872
Lele31g0230 573 MobiDBLite consensus disorder prediction 544 573 - -
Lele31g0230 573 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 365 410 IPR000504 GO:0003723
Lele31g0230 573 Gene3D - 300 442 IPR012677 -
Lele31g0230 573 SUPERFAMILY CCCH zinc finger 228 250 IPR036855 GO:0046872
Lele31g0230 573 CDD RRM_AtC3H46_like 355 424 IPR034365 -
Lele31g0230 573 MobiDBLite consensus disorder prediction 76 99 - -
Lele31g0230 573 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) 1 545 - -
Lele31g0230 573 FunFam zinc finger CCCH domain-containing protein 53-like isoform X2 360 431 - -
Lele31g0230 573 ProSiteProfiles Zinc finger C3H1-type profile. 225 252 IPR000571 GO:0046872
Lele31g0230 573 MobiDBLite consensus disorder prediction 65 102 - -
Lele31g0230 573 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 353 429 IPR000504 GO:0003723
Lele31g0230 573 Gene3D - 220 288 - -
Lele31g0230 573 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 230 250 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele31g0230 Lele-ChrLele31 2356809 2359054 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele29g1346 29 20116417 20118683 Lele31g0230 31 2356809 2359054 hybridization
Lele30g0207 30 2434589 2437550 Lele31g0230 31 2356809 2359054 hybridization