Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele30g1364 ATGGCTGTGAACGATGCTGACCAATCACATAAGCCTCACAGGTCTCGTCAGTCTGGTGCAAAGAAGGCCAAGTCGGATAAGAAGAAGAAGAAGCAAGAAGTTGGTGATGACCATCACAAACAAAATCCTAAGGCGTTTGCTTTTGCTTCTTCCGCGAAAGCCAAAAGATTACAATCCCGTGCCGTCGAGAAAGAGCAGCGTCGTCTTCATGTTCCAATTATTGACCGGTCTTATGGTGAGCCAGCACCTTATGTCGTCGTGGTGCAGGGTCCTCCGAAGGTTGGGAAGTCGCTCTTAATAAAGTCCTTGGTAAAACATTATACGAAGCAAAATTTGCCTGAGGTTCGAGGTCCGATAACCATTGTATCAGGAAAGCAGAGGCGACTGCAGTTTGTGGAATGCCCAAATGATATCAATGGCATGATAGACGCCGCAAAATTTGCAGATCTAGCATTGCTTCTCATAGATGGGAGCTATGGTTTTGAAGTGGAAACCTTTGAATTCCTTAATATATTACAAGTTCATGGGTTCCCAAAGGTCATGGGTGTTCTGACTCATCTTGATAAATTCAAGGATGCTAAAAAGTTGAAGAAAACAAAGCAACGTCTTAAACACCGTTTCTGGACTGAAATATACGATGGAGCTAAATTGTTTTATTTATCTGGTCTTATTCATGGAAAGTATCCAAAGCGTGAAGTGCACAATCTTGCCCGCTTTATTTCTGTTATGAAGTTTCATCCTCTATCTTGGCGAACTTCCCACCCTTATGTTTTGGTGGATCGGTTTGAAGATATCACTCCTGCTGAAAGAGTTATAGAAAATAAGAAATGTGACAGAAAAGTCACACTTTATGGTTATCTGAGAGGGTGTAATTTGAAAAGGGGAAATAAGGTGCACATAGCAGGAGTGGGTGATCATAGTTTAGCTGCTATCACTCTGTTACCTGATCCTTGCCCTCTACCATCTGCTGCAAAGAAGAAGGGACTGCGAGATAGGGAGAAGTTATTCTACGCTCCCATGTCTGGCCTTGGGGATCTTCTATATGACAAAGATGCTGTGTACATAAATATTAACGATCACTTAGTCCAGTTCTCAAAAGTTGATGACGAAAACTCATCCATGGCAGGCAAAGGAAAGGACAGAGATGTAGGGGAGGTTTTGGTGAGATCACTTCAGAATACCAAGTACTCAATCAATGAAAAACTAGAGAATAGCACTATCAATCTTTTTAGTCAAAAGTCAAATGTGTCATCTGAAGCACTACATGACGCACAAGGAAGAAATGTAGAAAATAATGAAATGGATATGGATGGTTCAGAATCTGATCAAGATGAAGCCGTTCCTCCCAATGCCATAACAGACAGTGAAACTAGTGATTCTGAAGAAGATAGTGACACAAGAGATGGTAAAGCTGCAACTGGAGATCACTTAAAAGAATGTGTTGAGTTTCATGGTGGAAGGCTTAGGAGAAGAGCAGTGTTTGGAAATGATGTTGATCAAAATGATTTGAAGGATTCAGATGAAGAGGACGGGGCTGTCAGTGATGATGCAGCATCATCTGACTCGGAATCTTCAGAAGAGAGCCATGATGATGATGCAGATGAAGATGATGTGGGAGAGGTTTCAAAGTGGAAGGAGTTGTTGGCTGAAAGAACTATCTTACGGCAAACTCGTAGCCTGATGCAACTTGTGTATGGGAAGTCTACTGTTAATTCAACCAATGTGAAGAAAGAGGATGACAGTAGTGAGGATGAAGAAAGTGAAGATGAATTTTTTAAGCCTAAAGAGGAAGTTAGAAAGCAAAAAATGAGAGAGGGATTAGATGGTGAAAATGTCAACACTGAGGACTGTTCTAAGACTGCAAAGTTTGTGGATGTTAAATGCTGGGAAGACAAAGATTTTGATCAAATTCGTGATCGTTTTGTTACTGGTGACTGGTCAAAAGCTGCACTTAGAAACCAAGTATCTGAGGCTACTACTGGAGATGAATTTGATGCTGTCTATGGTGACTTTGAAGATTTAGAAGCCGGAGAGAAGTATGAGAGTCATCAGACGGATAGTGAAGTTACTGAAATGGTACAGAAGGGAGAGGACTTGGAAGCTGAAGAGCGGAGGCTCAAGAAACTCGCTCTCCGTGCAAAATTTGATGCTCAATATCCTTCACACCCCCCTCTTTATGAAGAAGCAAGTAATAAAAATGAGGCCAAGTTCCATCGTGGTCAAGCTAATGAAAGTAGCTATTTCGATAAGTTGAAGGAGGAAATTGAACTTCGGAAACAGATGAATATAGCTGAACTCGATGATCTTGACGAGGCTACCCGATTAGAGATAGAAGGCTTTCAAACAGGAAGTTACCTAAGATTGGAGGTTCATGATGTCCCTTATGAGATGGTTGAATACTTTGATCCTTACCACCCAATATTAGTAGGAGGGATTGGTGTTGCAGAAGAAAATGTCGGATACATGCAGGCTAGGTTCAAGCGGCATAGATGGCACAAGAAAGTTCTTAAGACTAGAGATCCTATAATTGTTTCTGTTGGATGGAGGCGTTACCAGACAACCCCGGTTTATGCTATTGAGGATCGTAATGGGAGGCACCGTATGCTTAAATACACTCCAGAACATATGCATTGCTTGGCTATGTTTTGGGGCCCTCTTGCCCCTCTCAATACTGGGATAGTTGCTGTTCAGAATTTATCAAACAATCAGGAATCATTTAGGATCACGGCAACTGCCGTTGTACTTGAATTTAATCATGCAGCAAGGATAGTGAAGAAAATAAAGTTGGTTGGTTACCCTTGTAAGATATTCAAGAAGACAGCACTTATCAAGGATATGTTCACTTCGGATCTTGAAGTGGCTCGGTTTGAAGGTGCAGCTATTCGAACAGTGAGTGGGATCAGGGGGCAGGTCAAGAAGGCTGTAAAAGAAGATATCCACAAGCAGTCAAAGAAGAATGGAAGCAATCCCAATGAAGGAATTGCTCGGTGCACCTTTGAGGACAAAATTTTGATGAGTGACATTGTTTTCTTGCGTGCATGGACTCAAGTTGATGTTCCTCAGTTTTTTAATCCCTTAACAACAGCATTGCAGCCTCGTCAGCAGACCTGGCAAGGAATGAAAACAGTTGCTGAATTGAGAAAGGATTTCAAGCTTCCTGTACCTGTGAATAAAGATTCACTTTACAAGAAAATTGAAACAAAGCCACGGAAGTTCAATCCATTGGTGATTCCCAAGTCTCTACAGGAATCACTTCCTTTTGCGTCAAAACCTAAAGATATGCCTAGTCGAAAGCGGCGGTCACTTGCTGAGAGAAGGGCTGTTGTTCGGGATACTCATGAGCGTAAAGTCCATGCTCTTGTACAACAGCTCCAATTAATTAGAAATGAGAAGTTGAAAAAGCGCAAGCAGAAAGAGGAGGAGAAGAGGAAAGAACATGAAGCTGAGAGAGCAAAAGATGAGCAGTTGCAAAGAAAACGCCAAAGAGAAGAAAGGCGAGAGCGATATCGTGAGCAAGAAAAACAGAAGAAAATCCGGAGAGCAGAGAAAGGGGAGAAAAGAAAAATGAAGTTTCGTGGGGCTGGAGCTGATAAGCGAATTACGAGTACGAGCAGCCATTGGTCGATGGAAAAAGCTTGTGAATAA 3645 0.4195 MAVNDADQSHKPHRSRQSGAKKAKSDKKKKKQEVGDDHHKQNPKAFAFASSAKAKRLQSRAVEKEQRRLHVPIIDRSYGEPAPYVVVVQGPPKVGKSLLIKSLVKHYTKQNLPEVRGPITIVSGKQRRLQFVECPNDINGMIDAAKFADLALLLIDGSYGFEVETFEFLNILQVHGFPKVMGVLTHLDKFKDAKKLKKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYPKREVHNLARFISVMKFHPLSWRTSHPYVLVDRFEDITPAERVIENKKCDRKVTLYGYLRGCNLKRGNKVHIAGVGDHSLAAITLLPDPCPLPSAAKKKGLRDREKLFYAPMSGLGDLLYDKDAVYININDHLVQFSKVDDENSSMAGKGKDRDVGEVLVRSLQNTKYSINEKLENSTINLFSQKSNVSSEALHDAQGRNVENNEMDMDGSESDQDEAVPPNAITDSETSDSEEDSDTRDGKAATGDHLKECVEFHGGRLRRRAVFGNDVDQNDLKDSDEEDGAVSDDAASSDSESSEESHDDDADEDDVGEVSKWKELLAERTILRQTRSLMQLVYGKSTVNSTNVKKEDDSSEDEESEDEFFKPKEEVRKQKMREGLDGENVNTEDCSKTAKFVDVKCWEDKDFDQIRDRFVTGDWSKAALRNQVSEATTGDEFDAVYGDFEDLEAGEKYESHQTDSEVTEMVQKGEDLEAEERRLKKLALRAKFDAQYPSHPPLYEEASNKNEAKFHRGQANESSYFDKLKEEIELRKQMNIAELDDLDEATRLEIEGFQTGSYLRLEVHDVPYEMVEYFDPYHPILVGGIGVAEENVGYMQARFKRHRWHKKVLKTRDPIIVSVGWRRYQTTPVYAIEDRNGRHRMLKYTPEHMHCLAMFWGPLAPLNTGIVAVQNLSNNQESFRITATAVVLEFNHAARIVKKIKLVGYPCKIFKKTALIKDMFTSDLEVARFEGAAIRTVSGIRGQVKKAVKEDIHKQSKKNGSNPNEGIARCTFEDKILMSDIVFLRAWTQVDVPQFFNPLTTALQPRQQTWQGMKTVAELRKDFKLPVPVNKDSLYKKIETKPRKFNPLVIPKSLQESLPFASKPKDMPSRKRRSLAERRAVVRDTHERKVHALVQQLQLIRNEKLKKRKQKEEEKRKEHEAERAKDEQLQRKRQREERRERYREQEKQKKIRRAEKGEKRKMKFRGAGADKRITSTSSHWSMEKACE 1214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele30g1364 1214 MobiDBLite consensus disorder prediction 1198 1214 - -
Lele30g1364 1214 MobiDBLite consensus disorder prediction 498 541 - -
Lele30g1364 1214 Pfam 40S ribosome biogenesis protein Tsr1 and BMS1 C-terminal 695 1018 IPR007034 -
Lele30g1364 1214 MobiDBLite consensus disorder prediction 1086 1110 - -
Lele30g1364 1214 SMART DUF663_2 688 1017 IPR007034 -
Lele30g1364 1214 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 82 219 IPR027417 -
Lele30g1364 1214 SMART aarp2cn2 232 318 IPR012948 GO:0005634|GO:0042254
Lele30g1364 1214 MobiDBLite consensus disorder prediction 502 516 - -
Lele30g1364 1214 MobiDBLite consensus disorder prediction 1133 1180 - -
Lele30g1364 1214 PANTHER RIBOSOME BIOGENESIS PROTEIN 6 1166 IPR039761 GO:0042254
Lele30g1364 1214 MobiDBLite consensus disorder prediction 592 612 - -
Lele30g1364 1214 MobiDBLite consensus disorder prediction 418 473 - -
Lele30g1364 1214 MobiDBLite consensus disorder prediction 1 52 - -
Lele30g1364 1214 CDD BMS1 56 275 IPR037875 GO:0005525
Lele30g1364 1214 MobiDBLite consensus disorder prediction 29 43 - -
Lele30g1364 1214 Coils Coil 1110 1172 - -
Lele30g1364 1214 Coils Coil 692 712 - -
Lele30g1364 1214 FunFam BMS1 ribosome biogenesis factor 84 246 - -
Lele30g1364 1214 MobiDBLite consensus disorder prediction 1133 1214 - -
Lele30g1364 1214 MobiDBLite consensus disorder prediction 573 614 - -
Lele30g1364 1214 ProSiteProfiles Bms1-type guanine nucleotide-binding (G) domain profile. 82 246 IPR030387 -
Lele30g1364 1214 Gene3D - 84 246 IPR027417 -
Lele30g1364 1214 Pfam AARP2CN (NUC121) domain 232 317 IPR012948 GO:0005634|GO:0042254
Lele30g1364 1214 MobiDBLite consensus disorder prediction 1092 1110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele30g1364 Lele-ChrLele30 15813116 15821081 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele30g1364 30 15813116 15821081 Lele31g1514 31 20360310 20366745 hybridization
Lele30g1364 30 15813116 15821081 Lele32g0028 32 193162 200967 hybridization