Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele30g1305 ATGGAAAGCTCTCTACTATACATGAACCCTTCCCTCCCAAGTCGGTTTGGAGAGGGGTGCCGCCTCCGAACCTTGCCTCCTTCTCTGCTACTGAATCTACTCTTCGTATTGCTGTCTTGCGCAAATTACCTGCCATCTCTTCCGTACTCTTTTTCTCTGAGTTCGTTCTCTGATTCAGGCATCTTCTACATTAAGATGGTGCAGTATAACTTCAAAAAAATAACTGTGGTACCTAATGGGAAGGACTTCATTGACATAATCCTTTCTCGCACTCAGCGTCAAACACCAACTGTTGTGCATAAAGGATATAAGATTTCCCGCCTCCGTCAATTTTACATGCGCAAAGTAAAGTATACGCAACAAAATTTTCATGAAAAACTCTCCACTATCATTGATGAGTTCCCTCGGCTTGATGATATTCACCCATTCTATGGTGATCTCCTCCATGTACTCTACAACAAGGACCATTACAAGCTTGCACTTGGACAGATCAATACTGCGAGAAACCTTATTGGGAAGATTTGCAAGGACTATGTCAAGTTATTGAAGTATGGTGATTCACTATATAGATGCAAATGTCTGAAGGTTGCTGCTCTTGGCCGTATGTGTACTGTGATTAAGAGGATTGGCCCAAGTTTGGCTTATCTAGAGCAGGTGAGACAGCACATGGCAAGGCTCCCATCAATAGATCCAAACACAAGGACTATCTTGATTTGTGGTTACCCTAATGTTGGCAAGAGCTCATTCATTAACAAAATTACAAGAGCTGATGTGGATGTGCAGCCCTATGCTTTCACTACTAAGTCACTTTTTGTTGGTCATACAGACTACAAATACTTAAGGTACCAAGTAATTGATACACCAGGGATTCTGGACCGACCTTTTGAAGATCGGAACATTATTGAGATGTGCAGCATTACTGCCCTTGCTCATTTGCGAGCTGCTATATTGTTTTTCTTAGACATATCTGGATGTTGTGGTTATAGCATTGCACAACAGGCAGCTCTATTTAGCAGCATTAAGTCTCTGTTTATGAACAAACCATTAATTGTAGTCTGCAATAAAACTGATTTGCAACCGCTGGAAGGGGTGTCTGAGGAAGACGAGAAGTTGATCACAGAGATGAAAGCTGAGGCCTTGAAGACTCTGATTGGTCAAGGAGGTGAGCCTACAAATGATGAAAGTGTGTTGTTGACCATGAGCTCTTTGACAGAAGATGGGGTAATTGCTGTAAAAAATGCAGCATGTGAAAGATTGTTAAATCAAAGGGTGGAGATAAAGATGAAGTCCAAAAAGATAAATGACTGCTTGAATAGATTTCATGTTGCAGTGCCAAAACCACGTGACCAGAAGGAAAGGCCGCCTTGTATTCCTCCAGCAGTCATAGAAGCTAAGGCCAAGCAAGCGGTAGAAAAGGAAAAGAGAAAAAGTGAAAAGGATCTGGAAGATGAGAATGGTGGTGCAGGTGTATACTCAGCAAACCTGCGGAAGAACTATATTTTGGCTAATGATGAATGGAAAGAAGATGTACTGCCAGAAATTTTGGATGGACACAATGTGTATGATTTCATTGATCCTGATATTCTGCATAGGCTTGAAGAATTGGAAAGGGAAGACGGACTAAGACAGGCTGAGGAGTTAGATGATGATTTTGAGTTAGACGGAAATGAGTTGAGTCCAGAGGAACAGGAAGCTTTAGCCGCAATAAGAAAAAAGAAAAGCTTGCTCATCCAAGAGCATAGGAAGAAAAAGAGTACTGCAGAGAGCAGGCCAATTGTTCCAAGAAAACATGACAAGGATAGGAAGTTTACCACAGAAAGAATGGGAAGGCAGCTGTCATCTTTGGGGCTTGATCCCTCTTTGGCAATTGACAGAGCACACAGCAGATCTGTTTCTAGAAGAGGTAGAAAAAGGGAAAGGTCTCCTGAAGGCAGGGGTGCTGATGTGATGGATATAGATGTTGACTCATCCAGCAAGAAGAAGCGTATTAGATCTAGATCAAGGTCCAGGTCAGTTTCACGCCCACCAACTGAATTTGTGCCTGGCGAGGGCTTGAAGGATTCTACTCAAAAGATTAAGGCAGTAAAACTTGCAAAGAAATCTGTCAAGAAGCGGAACAAGGATGCTCGTCGTGGAGAAGCTGATAGGGTTATTCCTACTTTGAAGCCCAAGCACTTGTTTTCTGGGAAGCGTTCAATTGGAAAAACCCAAAGACGGTGA 2220 0.4243 MESSLLYMNPSLPSRFGEGCRLRTLPPSLLLNLLFVLLSCANYLPSLPYSFSLSSFSDSGIFYIKMVQYNFKKITVVPNGKDFIDIILSRTQRQTPTVVHKGYKISRLRQFYMRKVKYTQQNFHEKLSTIIDEFPRLDDIHPFYGDLLHVLYNKDHYKLALGQINTARNLIGKICKDYVKLLKYGDSLYRCKCLKVAALGRMCTVIKRIGPSLAYLEQVRQHMARLPSIDPNTRTILICGYPNVGKSSFINKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEMCSITALAHLRAAILFFLDISGCCGYSIAQQAALFSSIKSLFMNKPLIVVCNKTDLQPLEGVSEEDEKLITEMKAEALKTLIGQGGEPTNDESVLLTMSSLTEDGVIAVKNAACERLLNQRVEIKMKSKKINDCLNRFHVAVPKPRDQKERPPCIPPAVIEAKAKQAVEKEKRKSEKDLEDENGGAGVYSANLRKNYILANDEWKEDVLPEILDGHNVYDFIDPDILHRLEELEREDGLRQAEELDDDFELDGNELSPEEQEALAAIRKKKSLLIQEHRKKKSTAESRPIVPRKHDKDRKFTTERMGRQLSSLGLDPSLAIDRAHSRSVSRRGRKRERSPEGRGADVMDIDVDSSSKKKRIRSRSRSRSVSRPPTEFVPGEGLKDSTQKIKAVKLAKKSVKKRNKDARRGEADRVIPTLKPKHLFSGKRSIGKTQRR 739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele30g1305 739 Pfam Nucleolar GTP-binding protein 1 (NOG1) 301 357 IPR010674 GO:0005525
Lele30g1305 739 MobiDBLite consensus disorder prediction 580 607 - -
Lele30g1305 739 Gene3D - 67 226 - -
Lele30g1305 739 FunFam Nucleolar GTP-binding protein 1 227 439 - -
Lele30g1305 739 Pfam NOGCT (NUC087) domain 475 528 IPR012973 -
Lele30g1305 739 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 113 377 IPR027417 -
Lele30g1305 739 CDD NOG 234 420 - -
Lele30g1305 739 PRINTS GTP1/OBG GTP-binding protein family signature 257 275 IPR006073 GO:0005525
Lele30g1305 739 PRINTS GTP1/OBG GTP-binding protein family signature 236 256 IPR006073 GO:0005525
Lele30g1305 739 PRINTS GTP1/OBG GTP-binding protein family signature 284 299 IPR006073 GO:0005525
Lele30g1305 739 FunFam Nucleolar GTP-binding protein 1 68 226 - -
Lele30g1305 739 ProSiteProfiles OBG-type guanine nucleotide-binding (G) domain profile. 234 420 IPR031167 GO:0005525
Lele30g1305 739 Gene3D - 227 438 IPR027417 -
Lele30g1305 739 PANTHER NUCLEOLAR GTP-BINDING PROTEIN 1 68 574 - -
Lele30g1305 739 Pfam NOG1 N-terminal helical domain 71 230 IPR041623 -
Lele30g1305 739 MobiDBLite consensus disorder prediction 577 739 - -
Lele30g1305 739 MobiDBLite consensus disorder prediction 636 660 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele30g1305 Lele-ChrLele30 15458753 15461628 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele30g1305 30 15458753 15461628 Lele31g1457 31 20009050 20011342 hybridization
Lele30g1305 30 15458753 15461628 Lele32g0089 32 521337 523361 hybridization