Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele30g1255 ATGGCGTGCAAGAGTGGGTGCGAGGCTTTTAGGACGGACGAGCTGTGCTGCAGGAACCACTACAACAGTCCACAAACGTCTCCCTCTCCATTCCCTTTCGTCGGAGCTATTTCTATCTACCTCCGTCGGTTGATGGCATCTCAAGCTAGCCTTCTCCTTCAAAAGCAGCTAAAAGATCTTTGCAAAAACCCAGTTGACGGGTTCTCCGCCGGTTTAGTAGATGAAAACAACATATTCGAATGGAGTGTCACGATAATTGGGCCTCCCGATACTCTTTATGAGGGGGGATTCTTCAATGCCATAATGAGTTTTCCATCAAATTACCCGAACAGCCCACCATCAATGAAATTCACTTCAGAGATATGGCATCCAAATGTATATCCTGATGGACGGGTTTGCATATCAATTCTTCATCCTCCCGGTGAGGATCCAAACGGATATGAACTTGCAAGTGAGCGCTGGACGCCTGTTCATACAGTAGAGAGTATAGTTATGAGTATCATTTCTATGCTTTCTAGTCCTAATGATGAATCTCCGGCAAATGTTGAAGCTGCTAAGGAATGGAGAGACCGGAGAGACGATTTCAAGAAGAAGGTTAGCCGCTGTGTGAGGAAATCACAAGAAATGATGGGTTCACCTGTTACTGCGGTTGATCCGTGTAGAATGCCATTGGAAGTTGTCAACATACATCTTTCTTCAGTTCCGTTTTGTGCCACCAAGTTTTGTCTTTTGCTGGGCATTGTTATTCTTGACTTGCCATCATTTTCCCCTTTGTGTTCCATCCCATACTTTCGTATGGTGATACAAAAGAACTGTATATTTTCCTTTCTTGTATTCTTGTTTTCTTTACAGAAAGAGAGAAACCTAGAAGGTTCCATACGTCTCACGGAACTCAGACTTGCTGTGTCGTCATCAACCACCTTGTGCAGTAAGGGGGTGTGTGGTCATAGGCTTGAAGATTACAATATAAATGGTGAAGATATGGCCAAAATGCTACCAGATCCTACGGCTTCCCTATAA 1020 0.4412 MACKSGCEAFRTDELCCRNHYNSPQTSPSPFPFVGAISIYLRRLMASQASLLLQKQLKDLCKNPVDGFSAGLVDENNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPSMKFTSEIWHPNVYPDGRVCISILHPPGEDPNGYELASERWTPVHTVESIVMSIISMLSSPNDESPANVEAAKEWRDRRDDFKKKVSRCVRKSQEMMGSPVTAVDPCRMPLEVVNIHLSSVPFCATKFCLLLGIVILDLPSFSPLCSIPYFRMVIQKNCIFSFLVFLFSLQKERNLEGSIRLTELRLAVSSSTTLCSKGVCGHRLEDYNINGEDMAKMLPDPTASL 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele30g1255 339 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 48 208 IPR000608 -
Lele30g1255 339 SUPERFAMILY UBC-like 47 206 IPR016135 -
Lele30g1255 339 Pfam Ubiquitin-conjugating enzyme 53 202 IPR000608 -
Lele30g1255 339 FunFam ubiquitin-conjugating enzyme E2 7 46 210 - -
Lele30g1255 339 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 122 137 IPR023313 -
Lele30g1255 339 Gene3D Ubiquitin Conjugating Enzyme 45 212 IPR016135 -
Lele30g1255 339 SMART ubc_7 51 208 - -
Lele30g1255 339 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 47 208 - -
Lele30g1255 339 CDD UBCc 61 203 IPR000608 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele30g1255 Lele-ChrLele30 15156065 15163978 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele30g1255 55 175 Miscellaneous Gene Families AT3G17000 33.077 4.76e-13 67.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele30g1255 30 15156065 15163978 Lele31g1399 31 19712202 19715931 hybridization
Lele30g1255 30 15156065 15163978 Lele32g0144 32 822139 825500 hybridization