Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele32g0144 ATGGCATCTCAAGCTAGCCTTCTCCTTCAAAAGCAGCTAAAAGATCTTTGTAAAAACCCAGTTGACGGGTTCTCCGCCGGTTTAGTAGATGAAATCAACATATTCGAATGGAGTGTCACGATAATTGGGCCTCCCGATACTCTTTATGAGGGGGGATTCTTCAATGCCATAATGAGTTTTCCATCAAATTACCCGAACAGCCCACCATCAGTGAAATTCACTTCAGAGATATGGCATCCTAATGTATATCCTGATGGACGGGTTTGCATATCAATTCTTCATCCTCCCGGTGAGGATCCAAATGGATATGAACTTGCAAGTGAGCGCTGGACGCCTGTTCATACAGTAGAGAGCATAGTTTTGAGTATCATTTCTATGCTTTCTAGTCCTAATGATGAATCTCCGGCAAATGTTGAAGCTGCTAAGGAATGGAGAGACAGGAGAGACGATTTCAAGAAGAAGGTTAGCCGGTGTGTGAGGAAATCACAAGAAATGTTGTGA 501 0.4311 MASQASLLLQKQLKDLCKNPVDGFSAGLVDEINIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPSVKFTSEIWHPNVYPDGRVCISILHPPGEDPNGYELASERWTPVHTVESIVLSIISMLSSPNDESPANVEAAKEWRDRRDDFKKKVSRCVRKSQEML 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele32g0144 166 SMART ubc_7 7 164 - -
Lele32g0144 166 FunFam ubiquitin-conjugating enzyme E2 7 2 166 - -
Lele32g0144 166 Gene3D Ubiquitin Conjugating Enzyme 2 166 IPR016135 -
Lele32g0144 166 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 4 164 IPR000608 -
Lele32g0144 166 Pfam Ubiquitin-conjugating enzyme 9 158 IPR000608 -
Lele32g0144 166 SUPERFAMILY UBC-like 3 162 IPR016135 -
Lele32g0144 166 CDD UBCc 17 159 IPR000608 -
Lele32g0144 166 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 3 163 - -
Lele32g0144 166 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 78 93 IPR023313 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele32g0144 Lele-ChrLele32 822139 825500 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele32g0144 11 131 Miscellaneous Gene Families AT3G17000 31.538 1.16e-13 65.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele29g0154 29 852960 856081 Lele32g0144 32 822139 825500 hybridization
Lele30g1255 30 15156065 15163978 Lele32g0144 32 822139 825500 hybridization