Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele31g1399 ATGGCATCTCAAGCTAGCCTTCTCCTTCAAAAGCAGCTAAAAGATCTTTGCAAAAACCCCGTCGACGGGTTCTCCGCCGGTTTAGTAGATGAAAACAACATATTCGAATGGAGTGTCACGATAATTGGACCTCCCGATACTCTTTATGAGGGGGGATTCTTCAATGCCATAATGAGTTTTCCATCAAATTACCCGAACAGCCCACCATCAGTGAAATTCACTTCAGAGATTTGGCATCCAAATGTATATCCTGATGGACGGGTTTGCATATCAATTCTTCATGCTCCTGGTGAGGATCCAAATGGATATGAACTTGCAAGTGAGCGCTGGACGCCTGTTCATACAGTAGAGAGTATAGTTTTGAGTATCATTTCCATGCTTTCTAGTCCTAATGATGAATCTCCGGCAAATGTTGAAGCTGCTAAGGAGTGGAGAGACACGAGAGACGATTTCAAGAAGAAGGTATGGTGTGGATGGCCTCACGGCAGATATCATGATTGCTTCATAGAGAAGTCTGGAGAGATTATCATTTCTATTCTTTTGGGGCTTCTTTAA 555 0.4306 MASQASLLLQKQLKDLCKNPVDGFSAGLVDENNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPSVKFTSEIWHPNVYPDGRVCISILHAPGEDPNGYELASERWTPVHTVESIVLSIISMLSSPNDESPANVEAAKEWRDTRDDFKKKVWCGWPHGRYHDCFIEKSGEIIISILLGLL 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele31g1399 184 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 3 155 - -
Lele31g1399 184 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 4 164 IPR000608 -
Lele31g1399 184 SUPERFAMILY UBC-like 3 156 IPR016135 -
Lele31g1399 184 FunFam ubiquitin-conjugating enzyme E2 7 2 158 - -
Lele31g1399 184 Gene3D Ubiquitin Conjugating Enzyme 2 158 IPR016135 -
Lele31g1399 184 Pfam Ubiquitin-conjugating enzyme 9 155 IPR000608 -
Lele31g1399 184 SMART ubc_7 7 169 - -
Lele31g1399 184 CDD UBCc 17 155 IPR000608 -
Lele31g1399 184 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 78 93 IPR023313 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele31g1399 Lele-ChrLele31 19712202 19715931 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele31g1399 11 147 Miscellaneous Gene Families AT3G17000 29.371 7.81e-13 63.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele29g0154 29 852960 856081 Lele31g1399 31 19712202 19715931 hybridization
Lele30g1255 30 15156065 15163978 Lele31g1399 31 19712202 19715931 hybridization