Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele30g1097 ATGGCCCCTTTTACGTCTGAGAACGGCGTTGAAGGAGACGATGAAAGAGAGGAGGACGACGAGGCAGATGAAGAGGAAGAGGAGCCGAGGCTTAAGTACCAGAGAGTGGGAGGCAGCATACCTTCGCTGCTAGCCAGTGATGCGGCGTCGTGTGTCGCCGTTGCTGAGCGGATGATCGCCATTGGCACTCATTGTGGCACCGTCCATATCCTTGATTTTCTCGGGAATCAGGATATGACCATAGTCTACAGGCTTGACAATGGTGGCCCTCCCAGAACTTGGAATATGATTCAGCACTTTTTTGAGGTGCCACGTTGTTCAAGTGTATGTCATGTCTCCAATTATGGGTATCATCTGGACTACGGTGTCATGGTCCTTCGAGTGAAAGAATTTGTTGCTCATGCTGCTGCTGTTAATGACCTTAGCTTTGACGTAGAAGGCGAATATATTGGAAGCTGTTCTGATGATGGATCCGTGGTAATAAACAGCCTATTTACTGGTGGTTTAGTTGGCCATTTATATCTTAATTCAAAGACATGGTTAGGCCATCGTGATCAGGTTTTGCACTCTGGTGAGGGTCCAATACATGCTGTGAAGTGGAGAACAAGTCTTGTTGCTTGGGCGAATGATGCAGGAGTGAAGGTTTATGATACAGCCAATGATCAGCGTGTAACATTTATTGAAAAACCACGAGGGAGCCCACACCCTGAGCTTCTGTTTCCTCGCTTGGTTTGGCAGGATGATACGCTCTTGGTGATAGCTTGGGGAACGTCTATCAAAATTGTATCAATAAGAACAAATCTCTATAAAGCAGTCAATGGGATGAACAGGCCAGTCCCAATATCTAGGATGACCCAGGTGGATATCTTGGCATCTTTTCAAACCACCTATTTAATCTCAGGAATTGCCCCATTCGGTGATGCTTTGGTTGTTCTTGCTTATATTCCTGGAGAAGACGGAGAACAGGCTTTTAGTGGCAATGCTCCTTCTCAGCAGGTATCCCATGTGCATGCCACAGTAACAAACCAGCTTCCTGCTGCTGCTTACAAAGGCAATGCACAAAGACCAGAAGTACATATAGTAACATTGAACAATGATGAACTTTCAACAGATGCTCTACCATTGCATGGCTTTGAATATTACAAGGCAAATGATTATTCCCTTTCTCATGCTCCCTTCTCAGGTAGCAGTAATGCTGGTGGTCAAGGGGCTGCTGGTTATGAACCTCTTTACTACATTATGTCCCCAAAAGATGTAGTCATTGCAAAGCCAAGGGATACTGAAGATCATATTGCATGGCTTCTTCAACATGGGTGGCATGAAAAAGCTTTGGCTGTAGTTGAATCTGGTCAAGGAAGGAGTGAACTTCTTGATGAGGTTGGATCCAGGTATCTCGATCATTTAATTATGGAAAGAAAATATTCTGAAGCAGCTTCTTTGTGTCCCAAGTTGCTGCGAGGATCAGCTTCAGCATGGGAAAGATGGGTTTTCCACTTTGCACACCTTCGTCAACTTCCTGTATTGGTTCCCTATATGCCTACTGAAAACCCTAGACTGCGAGATACTGCTTATGAGGTTGCTCTTGTTGCATTGGCTACAAATCCATCTTTTCACAGGGATCTCTTGTCCATTGTCAAATCCTGGCCTCCTGTAATTTATAGTGCATTGCCTGTTATTTCAGCCATTCAACCTCAGCTCAATACTTCATCCATGACTGATTCACTCAAGGAGGCATTGGCTGAGTTATATGTAATCCACGGGCAATATGGGGAAGCTTTTTCCTTGTATGCTGATGTAGGTGGTGTTAATGTTAATGCAATTTTCTTATGCTCAGATCTTATGAAACCAGAAATATTTGACTTCATTTATAAACATAATCTACATGAACCAGTCCGAGAAAAGGTTGTCCAATTGATGATGCTAGATTGCAAGAGTGCAGTTGCTCTATTTATTCAAAACAGGGACTTTATAAGTTCACCTGAAGTTGTGAGGCAACTTCTAAATGCTGATAATAAGCGTGACTGCAGATATTTTGTACATTTATACCTTCATTCATTATTTGAAGTAAACCCACATGCTGGGAAGGAATTCCATGATATGCAGGTAGAACTTTATGCAGATTATGACCCAAAGATGCTGCTACCATTTCTTCGCAGTAGTCAACACCATAGCCTTGAGAAGGCCTATGAAATTTGCATCGAAAGAGATCTATTGAGGGAGCAAGTCTTTATCCTAGGAAGGATGGGAAACTCAAAACAAGCCCTATCTATTATTATTGATAAATTAGGGGATATAGAGGAGGCTGTAGAGTTTGTCACCATGCAGCATGATGATGATCTTTGGGAAGAACTGATCAAGCAATGTCTACACAAACCTGAAATGGTGGGCATCCTATTGGAACACACCGTTGGGTATCTTGATCCCCTCTACATAGTAAATAAGGTTCCCAATGGGATGGAAATACCTCGACTTAGGGATCGGCTGGTTAAAATTATCACCGATTACAGGACTGAAACATCACTCAGACACGGGTGCAATAATATCCTGAAGGCCGACTGTATCAACCTTCTAGGTAAGTATTACAAAGAGGCGAGGCATGGAGTTTATCTAAGCAATGAGATCGAGCCACGGGCTAAAAGAAGTGAAAATCATTATTCTCAGGTGGTTGAGAAATCTCCAATTTTGAGAAACGTTGAAGCGAAGTCGAAGAACAGAGGAGGGGGAAGATGTTGTATATGTTTTGACCCTTTTTCCATTCAGAATGTATCAGACTCAGTCGTTGTTTTCTTTTGCTGTCATGCTTATCACACAACATGTCTCATGGATTCCGCTGACACTAGCAGTAGCAATAAAGAGATTGAAGTCACTAACGGAAAGGAAGAACATTATGATTATAATAGTTTTGTGGATGAAGAAGAATCCGAGATGGATGGTCTTCGTATGCGTTGTATATTATGTACTACTGCCGCCAGTTCTGAAGCACCTATAGATTTTATCTTCTTCTTCGTAGGATTTCCAACAGATAACGCTGCCACCTTCAACGCTCTAGTGGTATTCATAGAGCATCGATACTATAGGGAATCAGTCCCATTTGGATCAAGGGAAGAAGCGATGAAGAACGCAAGCACTATTGGACATTTCAACTCAGCTCAAGCCCTTGCTGATTACGCAGAAATTCTCAGACATATCAAGGAAACTTTACAAAAGTTGGATAGCACGGTACTATGCTGA 3231 0.4268 MAPFTSENGVEGDDEREEDDEADEEEEEPRLKYQRVGGSIPSLLASDAASCVAVAERMIAIGTHCGTVHILDFLGNQDMTIVYRLDNGGPPRTWNMIQHFFEVPRCSSVCHVSNYGYHLDYGVMVLRVKEFVAHAAAVNDLSFDVEGEYIGSCSDDGSVVINSLFTGGLVGHLYLNSKTWLGHRDQVLHSGEGPIHAVKWRTSLVAWANDAGVKVYDTANDQRVTFIEKPRGSPHPELLFPRLVWQDDTLLVIAWGTSIKIVSIRTNLYKAVNGMNRPVPISRMTQVDILASFQTTYLISGIAPFGDALVVLAYIPGEDGEQAFSGNAPSQQVSHVHATVTNQLPAAAYKGNAQRPEVHIVTLNNDELSTDALPLHGFEYYKANDYSLSHAPFSGSSNAGGQGAAGYEPLYYIMSPKDVVIAKPRDTEDHIAWLLQHGWHEKALAVVESGQGRSELLDEVGSRYLDHLIMERKYSEAASLCPKLLRGSASAWERWVFHFAHLRQLPVLVPYMPTENPRLRDTAYEVALVALATNPSFHRDLLSIVKSWPPVIYSALPVISAIQPQLNTSSMTDSLKEALAELYVIHGQYGEAFSLYADVGGVNVNAIFLCSDLMKPEIFDFIYKHNLHEPVREKVVQLMMLDCKSAVALFIQNRDFISSPEVVRQLLNADNKRDCRYFVHLYLHSLFEVNPHAGKEFHDMQVELYADYDPKMLLPFLRSSQHHSLEKAYEICIERDLLREQVFILGRMGNSKQALSIIIDKLGDIEEAVEFVTMQHDDDLWEELIKQCLHKPEMVGILLEHTVGYLDPLYIVNKVPNGMEIPRLRDRLVKIITDYRTETSLRHGCNNILKADCINLLGKYYKEARHGVYLSNEIEPRAKRSENHYSQVVEKSPILRNVEAKSKNRGGGRCCICFDPFSIQNVSDSVVVFFCCHAYHTTCLMDSADTSSSNKEIEVTNGKEEHYDYNSFVDEEESEMDGLRMRCILCTTAASSEAPIDFIFFFVGFPTDNAATFNALVVFIEHRYYRESVPFGSREEAMKNASTIGHFNSAQALADYAEILRHIKETLQKLDSTVLC 1076
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele30g1097 1076 SUPERFAMILY RING/U-box 909 949 - -
Lele30g1097 1076 MobiDBLite consensus disorder prediction 11 27 - -
Lele30g1097 1076 Pfam Region in Clathrin and VPS 652 793 IPR000547 GO:0006886|GO:0016192
Lele30g1097 1076 FunFam Vacuolar protein sorting-associated protein 41 homolog 577 856 - -
Lele30g1097 1076 Gene3D Tetratricopeptide repeat domain 567 855 IPR011990 GO:0005515
Lele30g1097 1076 Gene3D alpha/beta hydrolase 982 1075 IPR029058 -
Lele30g1097 1076 PANTHER VACUOLAR PROTEIN SORTING VPS41 17 993 IPR045111 GO:0006623
Lele30g1097 1076 Pfam Serine carboxypeptidase S28 1004 1072 IPR008758 GO:0006508|GO:0008236
Lele30g1097 1076 SUPERFAMILY WD40 repeat-like 46 267 IPR036322 GO:0005515
Lele30g1097 1076 Gene3D - 38 302 IPR015943 GO:0005515
Lele30g1097 1076 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 650 797 IPR000547 GO:0006886|GO:0016192
Lele30g1097 1076 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 871 952 IPR013083 -
Lele30g1097 1076 SMART CLH_2 650 797 IPR000547 GO:0006886|GO:0016192
Lele30g1097 1076 SMART WD40_4 181 217 IPR001680 GO:0005515
Lele30g1097 1076 SMART WD40_4 124 163 IPR001680 GO:0005515
Lele30g1097 1076 CDD RING-H2_Vps 909 946 - -
Lele30g1097 1076 PIRSF Vps41 4 167 IPR016902 GO:0034058|GO:0046907
Lele30g1097 1076 PIRSF Vps41 163 953 IPR016902 GO:0034058|GO:0046907
Lele30g1097 1076 SMART ring_2 910 986 IPR001841 -
Lele30g1097 1076 MobiDBLite consensus disorder prediction 1 31 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele30g1097 Lele-ChrLele30 14086950 14096473 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele30g1097 30 14086950 14096473 Lele31g1235 31 18637531 18645514 hybridization
Lele30g1097 30 14086950 14096473 Lele32g0294 32 1842295 1850707 hybridization