Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele32g0294 ATGCCTGAGGAGATCTTCCACGCTGTCATTGAGATGGTCATCGACAGCGTTGGCATTACCCGCAGAAAATCTTGTCAGACGTTGAGGCTTGACAATGGTGGCCCTCCCAGAACTTGGAATATGATTCAGCACTTTTTTGAGGTGCCACGTTGTTCAAGTGTATGTCATGTCTCAAATTATGGGTATCATCTGGACTACGGTGGCATGGTCCTTCGAGTGAAAGAATTTGTTGCTCATGCTGCTGCTGTTAATGACCTTAGCTTTGACCTAGAAGGCGAATATATTGGAAGCTGTTCTGATGATGGATCCGTGGTAATAAACAGCCTATTTCCTGGTGAGAAAATGAAACTTGAGTATCGTCGTCCAATGAAGGCCATTGCTCTAGACCCGAATTATGCAAAAAAAGCATCAAGGAGATTTGTTGCAGGTGGTTTAGTTGGCCATTTATATCTTAATTCAAAGACATGGTTAGGCCATCGTGATCAGGTTTTGCACTCTGGTGAGGGTCCAATACATGCTGTGAAGTGGAGAACAAGTCTTGTTGCTTGGGCCAATGATGCAGGAGTGAAGGTTTATGATACAGCTAATGATCACCGTGTAACATTTATTGAAAAACCACGAGGGAACCCACACCCTGAGCTTCTGTTTCCTCACTTGGTTTGGCAGGATGATACGCTCTTGCTGATAGCTTGGGGAACGTCTATTAAAATTGTATCAATAAGAACAAATCTATATAAAGCAGTCAATGGGATGAACAGGCCAGTCCCAATATCTACTATGACCCAGGTGGATATTGTGGCATCTTTGCAAACCACCTATTTAATCTCGGGAATTGCCCCATTCGGTGATGCTTTGGTTGTTCTTGCTTATATTCCTGGAGAAGACGGAGAACAGGATTTTAGTAGCATTGCTCCTTCTCAGCAGGGAAATGCTCGAAGACCAGAAGTACATATAGTAACATGGAACAATGATGAACTTTCAACCGATGCTCTACCATTGCATTGCTTTGAGTATTACAAGGCAAATGATTATTCCCTTTCTCATGCTCCCTTCTCAGGTTGCAGTAATGCTGGTGGTCAATGGGCTGCTGGTTATGAACCTCTTTACTACATTATGTCCCCAAAAGATGTAGTCATTGCAAAGCCAAGGGATACTGAAGATCATATTGCATGGCTTCTTCAACATGGGTGGCATGGAAAAGCTTTGGCTGTAGTTGAATCTGGTCAAGGAAGGAGTGAACTTCTTGATGAGGTTGGATCCAGATGGGTTTTCCACTTTGCACACCTTCGTCAACTTCCTGTATTGGTTCCCTATATGCCTATTGAAAACCCTAGACTGCGAGATACTGCTTATGAGGTTGCTCTTGTTGCGTTGGCTACAAATCCATCTTTTCACAGGGATCTCTTGTCCATTGTCAAATCCTGGCCTCCTGTAATTTATAGTGCATTGCCTGTTATTTCAGCCATTGAACCTCAGCTCAGTGCTTCATCCATGACTGATTCACTCAAGGAGGCCTTGGCTGAGTTATATGTAGTCAACGGGCAATATGGGGAAGCTTTTTCATTGTATGCTGATGTAGGTGGCGTTAATGTTAATGCAATTTTCTTATGTTCAGATCTTATGAAACCAGAAATATTTGACTTCATTGATAGACATAATCTACATGAACCAGTCCGAGAAAAGGTTGTCCAATTGATGATGCTAGATTGCAAGCGTGCAGTTGCTCTATTTATTCAAAACAGGGACTTTATAAGTTCACCTGAAGTTGTGAGGCAACTTCTAAATGCTGATAATAAGCGTGACTGCAGATATTTTGTGCATTTATACCTTCATTCATTATTTGAAGTAAACCCACATGCTGGGAAGGAATTCCATGATATGCAGGCCTATGAAATTTGCATCAAAAGAGATCTATTGAGGGAGCAAGTCTTTATCCTAGGAAGGATAGGAAACTCGAAACAAGCCCTATCTATTATTATTGATAAATTAGGGGATATAGAGGAGGCTGTAGAGTTTGTCACCATGCAGCACGATGATGATCTGTGGGAAGAACTGACCAAGCAATGTCTACACAAACCTGAAATGGTGGGCATCCTATTGGAACACAACGTTGGGTATCTTGATCCCCTCTACATAGTAAATAAGGTTCCCAATGGGATGGAAATACCTCGACTTAGGGATCGGCTGGTTAAAATTATCACCGATTACAGGCCTGAAACATCACTCAGACACGGGTGCAATGATATCCTGAAGGCCGACTGTATCAACCTTCTAGGTAAGTATTACAAAGAGGCGAGGCATGGAGTTTATCTAAGCAATGAGATCGAGCCACGGGCTAAAAGAAGTGAAAATCATTATTCTCAGGTGGTTGAGAAATCTCCAATTTTGAGAAACGTTGAAGCGAAGTCGAAGAACAGAGGAGGGGGAAGATGTTTTATATGTTTTGACCCTTTTTCCATTCAGAATGTACCAGACTCAGTCGTTGTTTTCTTTTGCTGTCATGCTTATCACACAACTTGTCTCATGGATTCCGCTGACACTAGCAGTAGCAATAAAGAGATTGAAGTCACTAACGGAAAGGAATAA 2586 0.4215 MPEEIFHAVIEMVIDSVGITRRKSCQTLRLDNGGPPRTWNMIQHFFEVPRCSSVCHVSNYGYHLDYGGMVLRVKEFVAHAAAVNDLSFDLEGEYIGSCSDDGSVVINSLFPGEKMKLEYRRPMKAIALDPNYAKKASRRFVAGGLVGHLYLNSKTWLGHRDQVLHSGEGPIHAVKWRTSLVAWANDAGVKVYDTANDHRVTFIEKPRGNPHPELLFPHLVWQDDTLLLIAWGTSIKIVSIRTNLYKAVNGMNRPVPISTMTQVDIVASLQTTYLISGIAPFGDALVVLAYIPGEDGEQDFSSIAPSQQGNARRPEVHIVTWNNDELSTDALPLHCFEYYKANDYSLSHAPFSGCSNAGGQWAAGYEPLYYIMSPKDVVIAKPRDTEDHIAWLLQHGWHGKALAVVESGQGRSELLDEVGSRWVFHFAHLRQLPVLVPYMPIENPRLRDTAYEVALVALATNPSFHRDLLSIVKSWPPVIYSALPVISAIEPQLSASSMTDSLKEALAELYVVNGQYGEAFSLYADVGGVNVNAIFLCSDLMKPEIFDFIDRHNLHEPVREKVVQLMMLDCKRAVALFIQNRDFISSPEVVRQLLNADNKRDCRYFVHLYLHSLFEVNPHAGKEFHDMQAYEICIKRDLLREQVFILGRIGNSKQALSIIIDKLGDIEEAVEFVTMQHDDDLWEELTKQCLHKPEMVGILLEHNVGYLDPLYIVNKVPNGMEIPRLRDRLVKIITDYRPETSLRHGCNDILKADCINLLGKYYKEARHGVYLSNEIEPRAKRSENHYSQVVEKSPILRNVEAKSKNRGGGRCFICFDPFSIQNVPDSVVVFFCCHAYHTTCLMDSADTSSSNKEIEVTNGKE 861
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele32g0294 861 PIRSF Vps41 62 423 IPR016902 GO:0034058|GO:0046907
Lele32g0294 861 PIRSF Vps41 627 854 IPR016902 GO:0034058|GO:0046907
Lele32g0294 861 PIRSF Vps41 420 629 IPR016902 GO:0034058|GO:0046907
Lele32g0294 861 Gene3D - 53 277 IPR015943 GO:0005515
Lele32g0294 861 SMART CLH_2 577 698 IPR000547 GO:0006886|GO:0016192
Lele32g0294 861 Gene3D Tetratricopeptide repeat domain 602 755 IPR011990 GO:0005515
Lele32g0294 861 SUPERFAMILY RING/U-box 810 850 - -
Lele32g0294 861 SUPERFAMILY Putative isomerase YbhE 64 262 - -
Lele32g0294 861 PANTHER VACUOLAR PROTEIN SORTING VPS41 74 628 IPR045111 GO:0006623
Lele32g0294 861 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 628 698 IPR000547 GO:0006886|GO:0016192
Lele32g0294 861 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 772 851 IPR013083 -
Lele32g0294 861 CDD RING-H2_Vps 810 847 - -
Lele32g0294 861 Pfam Region in Clathrin and VPS 629 694 IPR000547 GO:0006886|GO:0016192
Lele32g0294 861 SMART WD40_4 157 193 IPR001680 GO:0005515
Lele32g0294 861 SMART WD40_4 69 108 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele32g0294 Lele-ChrLele32 1842295 1850707 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele30g1097 30 14086950 14096473 Lele32g0294 32 1842295 1850707 hybridization