Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele31g1235 ATGAATGTCGAATTGCCTTTGCTTATCATGCTCCCATTGTGGCTGTGTGAAGATGAATTTAAAGCTGCCCTGCATCAGTATTCAGTGCATTACCGACAGCAAATCTTGTCACAGCTCGCTATAGTCGTGCAGGTGGGGCTCTTTCATAAAGTAACGAGTCCGGTCCCGCAGCTTATTCTGCAAACCCCTTCACTATCTTTTCCCCCCTTAACCAACACTCAACGCAGAGATAGATCTCTCTGTGTCTTCGTGCTATTCCAGTTTATACTTGACACACTCATAATTCATCTCCTAAGACTCTCGTATACTTGTCACCGGCCAAAAGCACTTCGTTCTCGGAGACCGACCACGAAGCCGCCGGGAATAACTATAAGAATGGCTCCTTTTCCGTCTGAGAACGGCGTTGAAGGAGACGATGAAAGAGAGGAGGACGACGAGGAAGAAGAAGAGGATGGGGATGAGGAAGAGGAGCCGAGGCTTAAGTACCAGAGAGTGGGAGGCAGCGTACCTTCGCTGCTAGCCAGTGATGCGGCGTCGTGTGTCGCTGTTGCCGAGCGGATGATCGCCGTTGGCACTCATTCTGGCACCGTCCATATCCTTGATTTTCTTGGGAATCAGGTGAGAGAATTTGTTGCTCATGCTGCTGTTGTTAATGACCTTAGCTTTGACCTAGAAGGTGAATATATTGGAAGCTGTTCTGATGACGGATCCGTGGTAATAAACGGCCTATTTACTGGTGAGAAAATGAAACTTGAGTATCGTCGTCCAATGAAGGCTATTGCTCTGGACCCAAATTATGCGAGAAAAACATCAAGGAGATTTGTTGCAGGTGGTTTAGTTGGGCATTTATACCTTAATTCAAAGACATGGTTGGGCTTTCGTGATCAGGTTTTGCACTCTGGTGAGGGTCCAATACACGCTGTGAAGTGGAGAACAAGTCTTGTTGCTTGGGCCAATGATGCAGGAGTGAAGGTTTATGATACGGCAAATGATCAGCGTGTGACATTTATTGAAAAACCACGAGGGAGCCCACACCCTGAGCTTCTGCTTCCTCACTTGGTTTGGCAGGATGATACCCTCTTGGTGATAGCTTGGGGAACATCCATCAAAATTGTATCAATAAGAACAAATCTCTATAAAGCAGTCAATGGGATAAACAGGCCAGTCCCAGTATCTAGTATGAACCAGGTTGATATTGTGGCATCTTTTCAAACCAGCTACTTAATCTCAGGAATTGCCCCATTTGGTGATGCTTTGGTTGTTCTTGCTTATATTCCTCGAGAAGACGGAGAACAGGATTTTAGTGGCGCTGCTCCTTCTCAGCAGGGCAATGCACAAAGACCAGAAGTACATATAGTAACATGGAGCAATGATGAAATTTCAACAGATGCTCTACCATTACATGGCTTTGAATATTACAAGGCAAAAGATTATTCCCTTGCTCATGCTCCCTTCTCAGGTAGCAGTTATGCTGGTGGTCAATGGGCTGCAGGTGATGAACCTCTTTACTACATAATGTCCCCAAAAGATGTGGTCATTGCTAAGCCAAGGGATACTGAAGATCATATTGCATGGCTTCTTCGACATGGGTGGCATGAGAAAGCTTTGGCTGTAGTTGAATCTGGTCAAGGAAGGAGTGAACTTCTTGATGAGGTTGGATCCAGGTACCTTGATCATTTAATTGTGGAAAGAAAATATTCTGAAGCAGCTTCTTTGTGTCCCAAGTTGCTGCGAGGATCAGCTTCAGCATGGGAAAGATGGGTTTTCCACTTTGCACACCTTCGTCAACTTCCTGTATTGGCCCCCTATATGCCTACTGAAAACCCTAGACTGCGAGATACTGCTTATGAGGTCGCTCTCGTTGCATTGGCTACAAATCCATCTTTTCACGGGGATCTCTTGTCCATTGTCAAATCCTGGCCTCCTGTAATTTATAGCGCATTGCCTGTTATTTCAGCCATGGAACCTCAGCTCAATACTTCATCCATGACTGATTCCCTCAAGGAGGCATTGGCTGAGCTATATGTAATCAACGGGCAATATGGGGAAGCCTTTTCATTGTATGCTGATCTTATGAAACCAGAAATATTTGATTTCATTGATAAACACAATCTACATGAAGCAATCCGAGAAAAGGTTGTCCAACTGATGATGCTAGATTGCAAGCGTGCAGTTGCTCTATTTATTCAAAACAGGGACTTTATAAGTTCACCTGAAGTTGTGAAGCAACTTCTAAATGCTGATAATAATCGTGACAGCAGATATTTTGTACATTTATACCTTCATTCTTTATTTGAAGTAAACCCGCATGCTGGGAAGGAATTCCATGATATGCAGGTAGAACTTTATGCAGATTATGACCCAAAGATGATGCTGCCATTTCTTCGCAGTAGTCAACACTATACCCTTGAAAAGGCCCATGAAGTATGCATCAAAAGAGATCTATTGAGGGAGCAAGTCTTCATCCTAGGAAGGATGGGAAACTCGAAACAAGCCCTATCTATTATTATTGATAAATTAGGGGATATAGAGGAGGCTGTAGAGTTTGTCACCATGCAGCATGATGATGAACTTTGGGAAGAACTGATCAAGCAATGCCTACACAAACCTGAAATGGTGGGCATCCTATTGGAACACACCGTTGGGTATCTCGATCCCCTCTACATAGTAAATAAGGTTCCCAATGGGATGAAAATACCTCGACTTAGGGATCGGCTGGTTAAAATTATCACTGATTACAGGACTGAAACATCACTCAGACATGGGTGTAATGATATCCTGAAGGCCGACTGTGTGAACCTCTTAGTTAAGTATTACAAAGAGGCGAGGCATGGAGTTTATCTAAGTAATGAGGTGGAGCCACGGGCTAAAAGAAGTGAAAATCATTATTCTCAGGTGGTTGACAAATCTCCAATTCTGAGAAACGTTGAAGCGAAGTCGAAGAATAGAGGAGGTGGAAGATGTTGTATATGTTTTGACCCTTTTTCCATTCAGAATGTATCAGACTCAGTCGTTGTTTTCTTTTGCTGTCATGCTTATCACACAACTTGTCTCATGGATTCCGCTGACACTAGCAGTAGCAATAAAGAGATTGGAGTCACTAATGGAAAGGCAGAACGTTATGATTATAATAGTTTTGTGGATGAAGAAGAATCCGAGATGGATGGTCATCATCGTATGCGTTGTATATTATGTACTACTGCTGCCAGTTGA 3213 0.4357 MNVELPLLIMLPLWLCEDEFKAALHQYSVHYRQQILSQLAIVVQVGLFHKVTSPVPQLILQTPSLSFPPLTNTQRRDRSLCVFVLFQFILDTLIIHLLRLSYTCHRPKALRSRRPTTKPPGITIRMAPFPSENGVEGDDEREEDDEEEEEDGDEEEEPRLKYQRVGGSVPSLLASDAASCVAVAERMIAVGTHSGTVHILDFLGNQVREFVAHAAVVNDLSFDLEGEYIGSCSDDGSVVINGLFTGEKMKLEYRRPMKAIALDPNYARKTSRRFVAGGLVGHLYLNSKTWLGFRDQVLHSGEGPIHAVKWRTSLVAWANDAGVKVYDTANDQRVTFIEKPRGSPHPELLLPHLVWQDDTLLVIAWGTSIKIVSIRTNLYKAVNGINRPVPVSSMNQVDIVASFQTSYLISGIAPFGDALVVLAYIPREDGEQDFSGAAPSQQGNAQRPEVHIVTWSNDEISTDALPLHGFEYYKAKDYSLAHAPFSGSSYAGGQWAAGDEPLYYIMSPKDVVIAKPRDTEDHIAWLLRHGWHEKALAVVESGQGRSELLDEVGSRYLDHLIVERKYSEAASLCPKLLRGSASAWERWVFHFAHLRQLPVLAPYMPTENPRLRDTAYEVALVALATNPSFHGDLLSIVKSWPPVIYSALPVISAMEPQLNTSSMTDSLKEALAELYVINGQYGEAFSLYADLMKPEIFDFIDKHNLHEAIREKVVQLMMLDCKRAVALFIQNRDFISSPEVVKQLLNADNNRDSRYFVHLYLHSLFEVNPHAGKEFHDMQVELYADYDPKMMLPFLRSSQHYTLEKAHEVCIKRDLLREQVFILGRMGNSKQALSIIIDKLGDIEEAVEFVTMQHDDELWEELIKQCLHKPEMVGILLEHTVGYLDPLYIVNKVPNGMKIPRLRDRLVKIITDYRTETSLRHGCNDILKADCVNLLVKYYKEARHGVYLSNEVEPRAKRSENHYSQVVDKSPILRNVEAKSKNRGGGRCCICFDPFSIQNVSDSVVVFFCCHAYHTTCLMDSADTSSSNKEIGVTNGKAERYDYNSFVDEEESEMDGHHRMRCILCTTAAS 1070
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele31g1235 1070 FunFam Vacuolar protein sorting-associated protein 41 homolog 669 934 - -
Lele31g1235 1070 FunFam Vacuolar protein sorting-associated protein 41 homolog 130 401 - -
Lele31g1235 1070 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 728 875 IPR000547 GO:0006886|GO:0016192
Lele31g1235 1070 PANTHER VACUOLAR PROTEIN SORTING VPS41 139 1054 IPR045111 GO:0006623
Lele31g1235 1070 MobiDBLite consensus disorder prediction 109 162 - -
Lele31g1235 1070 SMART ring_2 988 1065 IPR001841 -
Lele31g1235 1070 SMART WD40_4 291 327 IPR001680 GO:0005515
Lele31g1235 1070 SMART WD40_4 203 242 IPR001680 GO:0005515
Lele31g1235 1070 SMART WD40_4 166 201 IPR001680 GO:0005515
Lele31g1235 1070 SMART CLH_2 728 875 IPR000547 GO:0006886|GO:0016192
Lele31g1235 1070 CDD RING-H2_Vps 987 1024 - -
Lele31g1235 1070 Gene3D Tetratricopeptide repeat domain 664 935 IPR011990 GO:0005515
Lele31g1235 1070 SUPERFAMILY WD40 repeat-like 175 377 IPR036322 GO:0005515
Lele31g1235 1070 SUPERFAMILY RING/U-box 987 1027 - -
Lele31g1235 1070 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 949 1030 IPR013083 -
Lele31g1235 1070 Pfam Region in Clathrin and VPS 730 871 IPR000547 GO:0006886|GO:0016192
Lele31g1235 1070 MobiDBLite consensus disorder prediction 136 156 - -
Lele31g1235 1070 PIRSF Vps41 128 1031 IPR016902 GO:0034058|GO:0046907
Lele31g1235 1070 Gene3D - 174 458 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele31g1235 Lele-ChrLele31 18637531 18645514 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele30g1097 30 14086950 14096473 Lele31g1235 31 18637531 18645514 hybridization