Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele30g1069 ATGCACGCACACACTAATACCCCTGTTGAAGGTGGGTCGTATCTGATGATGTTTGTGAAAAATTCACACCGAGTGGGCTCCACCTCTTCCTTCATCCTCGGTTCTGGCAGTATAGTAAATCAGCAAGTTTTACTGTTATTACCTTGCCATATCAGGACTAGGGTTATGTCATGCAGTGTTGCAGAAGATGAAAAAGAGGAAAACTCACGTAGGAAACAGATAGGGACTGTGAGTGAAGAAGCCATAGCCATAGCCATGGGAGAGTTCAAGCACTTTGTGATTGTTAAGTTCAAGGAAGGTGTTGCCGTTGAAGATCTCATCAAAGGCATGGAGAAGATGGTCTCTCAGATTGATTCTGTCAAACACTTTGAATGGGGACAGGACACTGAGAGCCCAGAGATGTTAAGACAGGGTTACACTCATGCCTTCTTGATGACATTCAACAGTAAGGAAGATTTTGTTGCATTTCAAGGTCACCAAAATCATGTGGAATTCTCAGCAACATTTTCTACTGCTATTGAGAAGCTTGTTCTTCTGGATTTCCCAACCACTCTTGTTAAGCCGCCGCCGCCACCAGCAGCTACCACAGCATGA 594 0.4444 MHAHTNTPVEGGSYLMMFVKNSHRVGSTSSFILGSGSIVNQQVLLLLPCHIRTRVMSCSVAEDEKEENSRRKQIGTVSEEAIAIAMGEFKHFVIVKFKEGVAVEDLIKGMEKMVSQIDSVKHFEWGQDTESPEMLRQGYTHAFLMTFNSKEDFVAFQGHQNHVEFSATFSTAIEKLVLLDFPTTLVKPPPPPAATTA 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele30g1069 197 SUPERFAMILY Dimeric alpha+beta barrel 86 184 IPR011008 -
Lele30g1069 197 SMART Dabb_2 89 183 IPR013097 -
Lele30g1069 197 PANTHER - 86 184 IPR044662 -
Lele30g1069 197 Gene3D - 85 192 - -
Lele30g1069 197 ProSiteProfiles Stress-response A/B barrel domain profile. 89 181 IPR013097 -
Lele30g1069 197 Pfam Stress responsive A/B Barrel Domain 90 181 IPR013097 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele30g1069 Lele-ChrLele30 13923289 13926606 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele09g1086 09 20050159 20053424 Lele30g1069 30 13923289 13926606 CCT
Lele10g1053 10 21838894 21842146 Lele30g1069 30 13923289 13926606 CCT
Lele30g1069 30 13923289 13926606 Lele31g1207 31 18455274 18455703 hybridization
Lele30g1069 30 13923289 13926606 Lele32g0322 32 2001631 2002084 hybridization