Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele30g0636 ATGTCTATTATTTCTCCCTACAGGAATCTCGGAGCTTTAGCTGTGCGAAGGTCATTGAATTTTCAAAGGAAATTATCGTACAAGTATTGTCCTGGGAAGATAAGAATGGAAGCTAATTCTAATCATAACATAGAAAACAGAAGAGTGGAACCTAGAGGTGCTTTGATTGTCCTAGAAGGCTTGGATCGTTCTGGGAAGTCTTCTCAAAGTAGCAGATTAGTTTCATACTTGGAGGGACAAGGGATCTCTGCTGAATTATGGAGGTTTCCTGACAGAAGTACGAATGTTGGGCAAATGATATCTTCCTATCTTACTAACACGTCTCAATTGGATGATCACACCATTCATCTTCTCTTTAGTGCAAATCGTTGGGAGAAGAGATCACTGATGGAAACCAAACTGAAAGCTGGAACAACCCTCATTGTTGACCGATATTCTTACTCTGGAGTGGCTTTCTCATCGTCCAAAGGGCTTGACATTGAATGGTGTAAGGCACCCGAGGTTGGCTTGTTTGCTCCTGATGCTGTAATATTCCTTGACATATCACCAGAGAAAGCTGCAGAGAGAGGAGGGTATGGAGGTGAGAGATATGAAAAGCTGGAGTTTCAGAAGAAAGTTGCTGAAAGCTACAAAGTTCTCCACGATGCCTCCTGGAAGATTGTAGATGCCTGCCAATCCATGGAAGATGTGGAGAAACAGCTGCAAGATGTAGTACTTGATAGTGTCAAGGAATGTCAGAAGGGGAAGCCCCTTTCCCATTTGTGGTGTATCCCTAATGTTATGGTTAGGAATTTTTTTGGGGGTACAATATGGTATGCATTGGATGTAAATGTGGAAAGGAGGAGAGTATATTCGGGTAGCAATTCGCTGTTGATGGACCCTGACTTTGTGGAAATTCCTTCCCCAATTCATCGCCCTACGAAACTGATGAAACAGAAGGCTATTATTAGTGATGTGATTGACGTTGACAATGATGAGGACTCTGCTGATCTAGTGTTCATTGGTGAAAAAGTTGGTGGAAGCAACAAGGGAAAGGAAATGTCTGGTGAACATTTTGGACCAGCTAGTGGGCTTGAGTCCTCCAATGATTATGCTTCAGTATCACATAACTTAATCGATGTTGATGGTCACAGTTCTGATTTATCAAATGATGATGATGACTACAATGATCCTTTTGCTGAAGATTTCATGGATGTCGATCAGTACGCCAGGTTACAGGCACACTTTGACCATGTGGATATACCTGCTGGAATTGAGGCGCCTATTCCCTGGATGTCAAATTTTGGTCTGAAATCTGAAAGTAGTTCTTCGAATCCTTGGGGTAACGTGCTGTTAGATGCTAAAAGTTCTCATGTGACAGACTTATTTCAGCTTTCCTGGGCAATAGAGTCTTCTGACCTCATCCAAGAAACTCCAGTTTGTAGTTCTAGTTCACTAACAAAAGATGTTGCTGTTAATCCTCCTTCTCAAAAGTTGTCTTCTCAGTTACATACTGAAGCTGCTCCAGGTAAAAAGCCATCAACTTTTTCACAACTTGATGGGCTTAAGCAGAACTTGAATCTAGCACCAGGGGTAGATTCATCCAAACCTGATTGGTTCAAGGGACCTTTCGGTCGTGAGAAGAAGCTTTCTATTTTAGGTGACTATCATAATGATGCTTTAGCACACAAGTCAGAGTCCTTGAAGCTGCCACCTGGAGGTGAACCCCCTCATTGGGGGAAAGCTAAAAGTGCAAAAAAGGCACATGGAAAAGATGTTCTGTTCCATCCAAAATTCTTTCCACCTTTTGAAGGGTCACACCATTTTCCTGGATTGGAATCAGCAAACTCTAATATGTGGAAGAATCCTCCTAACCTGCCTTTTACAGATCATTCAGATAATTTAGGTCTTTATTATCCATTTGATCCTCTTGATGCCCCTCTTCCACCAATGTTTGGTGATACTTGGTTTCATAATTATGCCAGTGATGAAAAGAATGAAACCAATGCTAACATCCTGGTTGTTACAATACCTGATGAAGACAGGGATGGAATCTTGAGGAAATTCCAAGAGTTTAAACAGTTTGACACAGTTGATGACGCTTCAGACCATTACTATAATCGCAAGAGTTATTCCTTGAAGCAGAATTCGAAGAATTGGTCTAAGAAAATTCAGGAAGAGTGGAGGATTCTGGAGAAGGATTTGCCTGATTCAATATGTGTTAGAGTTTATGAATCAAGGATGGATGTTTTGAGAGCTGTAATTATTGGAGCGGAGGAAACTCCTTATCATGATGGTCTCTTCTTTTTTGATGTTTTTTTTCCGAGTCGCTACCCCGATGTGCCACCGGAAGTCCACTACCACTCTGGTGGTGTTAGGATCAACCCAAATTTGTATGAATGCGGCAAAGTATGCCTCAGTCTGCTTAATACTTGGTCTGGCAATAAGAATGAGAAGTGGCTTCCTGGTGTTTCAACAATTCTACAGGTTCTTGTTTCTATACAAGGTTTAGTCTTGAATGCAAAGCCTTATTTTAATGAGCCTATGTATGCCCATATGAGTGGTTCTACCGCTGGCGAACTGAGGTCCCTGCAGTATAACGAGGATGCATTTATTCTATCATTGAAGACAATGACGTACGTGATGAAAAAGCCTCCAAAGCATTTTGAGGACTTCGTTGCAGGGCATTTCTGCAACCGGGCTCGCAATATCTTGGTGGCGTGTAAGGCATACATGGAAGGTGCTCAAGTTGGCTGTTTGGTCAAAGGTGGGGTGCAGGATGCTGACGCGGGTGACTGGAGCTGTTCGAAGCAGTTTAAGGATACTTTAGCTGGATTAGGGAATAGGCTCGTCAGAGAATTTTCCAAAGTTGGAGCTAAGGACTGTGAGAAATTCTTGCCGCAGGCGGCGACTACAACCGGGAACAATCTGGCAGGTTGTAGCCCTGATGCTGTTGTTCCTGCTAGCTGA 2949 0.4256 MSIISPYRNLGALAVRRSLNFQRKLSYKYCPGKIRMEANSNHNIENRRVEPRGALIVLEGLDRSGKSSQSSRLVSYLEGQGISAELWRFPDRSTNVGQMISSYLTNTSQLDDHTIHLLFSANRWEKRSLMETKLKAGTTLIVDRYSYSGVAFSSSKGLDIEWCKAPEVGLFAPDAVIFLDISPEKAAERGGYGGERYEKLEFQKKVAESYKVLHDASWKIVDACQSMEDVEKQLQDVVLDSVKECQKGKPLSHLWCIPNVMVRNFFGGTIWYALDVNVERRRVYSGSNSLLMDPDFVEIPSPIHRPTKLMKQKAIISDVIDVDNDEDSADLVFIGEKVGGSNKGKEMSGEHFGPASGLESSNDYASVSHNLIDVDGHSSDLSNDDDDYNDPFAEDFMDVDQYARLQAHFDHVDIPAGIEAPIPWMSNFGLKSESSSSNPWGNVLLDAKSSHVTDLFQLSWAIESSDLIQETPVCSSSSLTKDVAVNPPSQKLSSQLHTEAAPGKKPSTFSQLDGLKQNLNLAPGVDSSKPDWFKGPFGREKKLSILGDYHNDALAHKSESLKLPPGGEPPHWGKAKSAKKAHGKDVLFHPKFFPPFEGSHHFPGLESANSNMWKNPPNLPFTDHSDNLGLYYPFDPLDAPLPPMFGDTWFHNYASDEKNETNANILVVTIPDEDRDGILRKFQEFKQFDTVDDASDHYYNRKSYSLKQNSKNWSKKIQEEWRILEKDLPDSICVRVYESRMDVLRAVIIGAEETPYHDGLFFFDVFFPSRYPDVPPEVHYHSGGVRINPNLYECGKVCLSLLNTWSGNKNEKWLPGVSTILQVLVSIQGLVLNAKPYFNEPMYAHMSGSTAGELRSLQYNEDAFILSLKTMTYVMKKPPKHFEDFVAGHFCNRARNILVACKAYMEGAQVGCLVKGGVQDADAGDWSCSKQFKDTLAGLGNRLVREFSKVGAKDCEKFLPQAATTTGNNLAGCSPDAVVPAS 982
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele30g0636 982 PANTHER (E3-INDEPENDENT) E2 UBIQUITIN-CONJUGATING ENZYME 675 954 - -
Lele30g0636 982 Gene3D - 47 256 IPR027417 -
Lele30g0636 982 SUPERFAMILY UBC-like 701 881 IPR016135 -
Lele30g0636 982 Hamap Thymidylate kinase [tmk]. 54 242 IPR018094 GO:0004798|GO:0005524|GO:0006233
Lele30g0636 982 ProSitePatterns Thymidylate kinase signature. 141 153 IPR018095 GO:0004798|GO:0005524|GO:0006233
Lele30g0636 982 Gene3D Ubiquitin Conjugating Enzyme 674 949 IPR016135 -
Lele30g0636 982 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 52 246 IPR027417 -
Lele30g0636 982 Pfam Ubiquitin-conjugating enzyme 717 847 IPR000608 -
Lele30g0636 982 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 712 872 IPR000608 -
Lele30g0636 982 TIGRFAM DTMP_kinase: dTMP kinase 53 233 IPR018094 GO:0004798|GO:0005524|GO:0006233
Lele30g0636 982 FunFam Thymidylate kinase 48 256 - -
Lele30g0636 982 CDD UBCc 714 846 IPR000608 -
Lele30g0636 982 MobiDBLite consensus disorder prediction 485 506 - -
Lele30g0636 982 CDD TMPK 55 240 - -
Lele30g0636 982 SMART ubc_7 715 872 - -
Lele30g0636 982 FunFam Probable ubiquitin-conjugating enzyme E2 23 675 951 - -
Lele30g0636 982 Pfam Thymidylate kinase 58 233 IPR039430 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele30g0636 Lele-ChrLele30 11041610 11055690 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele30g0636 652 962 Miscellaneous Gene Families AT2G33770 47.077 2.28e-82 284
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele30g0636 30 11041610 11055690 Lele31g0773 31 15434333 15440871 hybridization
Lele30g0636 30 11041610 11055690 Lele32g0743 32 4791175 4799350 hybridization