Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele29g1353 ATGGCGTGTATAAAAGGGGTAAATCGATCGGCGTCCGTGGCCCTGGCCCCGGACGCACCCTACATGGCGGCCGGAACCATGGCGGGGGCAGTTGATCTGTCCTTTAGCTCCTCCGCTAATCTCGAAATATTCAAACTTGATTTCCAGTCCGATGATCAGGAACTGCCATTGGTCGCGGAGTGCCCGAGCTCCGAGCGGTTCAATCGTCTGTCTTGGGGAAAGAGTAGTTCTGCCTCTGAAGGTTTCTCCCTTGGGCTCGTTGCGGGTGGGCTGGTCGATGGCAATATTGCCCTCTGGAATCCTCTCACTTTGATCCGTTCGGAGGCAAAAGAAAGTGCTTTTCTTCAACATCTTGTGAGGCATAAAGGGCCAGTCCGTGGTCTCGAGTTTAATACCATTGCTCCAAATCTTCTTGCATCTGGGGCTGAGGATGGTGAAATTTGCATATGGGATTTGGCCAATCCTTCAGAGCCATCTCATTTTCCACCGCTAAGGGGTAGTGGCTCTGCTACCCAGGGTGAAATTTCATTCTTATCTTGGAATAGCAAAGTCCAACACATATTAGCATCAACTTCATATAATGGGACTACTGTGATCTGGGACCTAAGGAAGCAAAAGCCAGTGATAAGCTTTGCAGACTCAGTTAGAAGGCGATGTTCAGTTTTGCAGTGGAACCCTGATTTTGCCACTGAGCTAGTTGTTGCATCAGATGAAGATGGTTCTCCTGCTGTGAGGCTTTGGGATATGAGGAATATAATGGCACCAATTAAAGAGTTTGTGGGACACAGCAGAGGTGTAATTGCCATGTCATGGTGTCCCTATGATAGCTATTATTTGCTTACCTGTGCCAAAGATAATCGAACCATATGCTGGGACACAACTTCTGGAGAGATTGTACGTGAATTGCCTGCTGGGACCAACTGGAATTTCGATGTGCATTGGTATCCTAAAATACCTGGAGTGATTTCAACATCTTCCTTTGATGGAAAAGTTGGCATCTACAATGTTGAGGGTTGCAGTTGGTATGGGGCCGGGCAAAATGATTTTGGTGCAGCTCTAAGAGCTCCAAAATGGTATAAACGCCCAGTTGGGGTGTCTTTTGGTTTTGGTGGCAAGCTTGTATCATTTAATACCAAGTCATCTGCCACAAATGCTCCTGCTGGGGCTTCAGAGGTTTATGTGCATAATATGGTTACTGAACATAGTCTTGTGAGTCGTTCATCCGAATTTGAAGCTGCAATACATAATGGGGAAAGGTCTTTGCTGAGGGTTTTATGCGACAAAAAGTCTCAGGAATCAGAATCTGATGAAGAAAGAGAAACATGGGGCTTCTTAAAGGTTATGTTTGAAGATGATGGGACAGCACGAACGAAGCTGCTTGCACACCTTGGTTTTACTGTACCTATTGAAGAAAAAGCATCTGTAGATGATCTAGCACAAGAAGTCGGTGCTATTGGACTTGATGGGACAGCTGTTGATAAAGTAGGACTTGGGCCTACTAAAGAATCCACAGTTTTCCCAGATACTGGGGAGGACTTCTTTAACAATCTTCCTAGTCCCAGAGCTGAGACTCCTTTATCCACTTCTGGTGGTAATGTGGATTATGCCAATCGTTTGGACAAAATCCAAGAAGAGTTGGAAGTAGAGGAGAGTGATGATCCTACATTTGATGATAGTGTTCAGCGTGCATTAGTTGTTGGGGACTACAAAGGGGCAGTTGAACAATGCATATCTGCAAATAAGTGGGCTGATGCTCTAGTTATTGCTCATGTAGGTGGTGCTTCACTATGGGAAAGTACACGAGACCAATACCTTAAGAGAATTAGATCACCGTACTTGAAGATTGTCTCTGCGATGGTGAGCAAGGACCTCTTAAGCCTTGTGAACACTAGGCCTCTAAAATTTTGGAAAGAGACTCTTGCTCTTCTTTGTAGTTTTGCTCAGAGTGATGAATGGGCAATGCTATGTGACACACTTGCTTCAAAACTCATGGAAGCTGGAAATACATTAGCTGCAACTCTCTGTTATATCTGTGCTGGCAGTATTGATCATACAGTTGAAATTTGGTCAAAGAATCTGCAGATTGAGCATGAAGGAAAATCGTATGTTGATGTTCTCCAGGATTTGATGGAAAAAACTATTGTTCTTGCCTTAGCAACTGGGCAGAAGCAATTTAGTGCATCTCTTTGCAAGCTTGTCGAGAAATATGCTGAAATTTTAGCAAGTCAAGGAATGTTGACTACAGCAATGGAGTATATAAAACTTTTGGGTTCTGCTGAACTGTCACCTGAACTTATAGTCTTAAAAGATCGAATTTCTCTTTCTACACAACCTGAGAAAGAAGTCCAGACTACTGAGCTTGAAAATACTCAGCGACAGATTGGATCATTTTACAGTGCTGATACTTCCAATTATGGTAGAAATTATTATCAGGAGTCAGTTTCGCCACAAGTGCAGCATGGTGCTTCTGGAATTCCATATGATGAAAACTATCAACAGCCTTTTGATCCCTCATATGGGAGAGGATATGCTGGTTCTGCTCCATTTCAGCAACCCCAACAACCTAATTTGTTTGTTCCTTCACAGGCACCTCAGGTTCACCAAGCTCCTCAGCCAAACTTAACTGCGCCTGTCACACAACCTCCTATGAGATCTTTTGTTCCTCACACTCCTCCAGCGCTAAGAAATGTCGAGCAATATCAGCAGCCAACATTGGGTTCTCAGTTGTATCCTGCAGCCGCCAATCCACCTTACCAACCTACACCCCCTGCCACATCTCAAATGGGTATGGTTCATGGCCAGAAATTGCCACATGTTGTGGCGCCAACCCCAAATCCAAGGGGATTCGCCACAGTCCCCAGTTCTGGTGTTGCGCAAAGACCTGGGATTGGATCAATTCAGCCTCCCAGTCCCCCTCAGGCGGCTCCTGCACAGCCAGCTCCTGCACAGATAGCTCCAGCACCAGCTGCTCCACCTCCAACTGTTCAAACAGCCGATACTTCAAATGTGCCTGCGCACCAAAAGCTCATTGTCACAACATTGACAAGGCTTTTCAACGAGACATCAGAAGCACTGGGAGGTCCACGTGCAAATCCAGCTAAAAAGCGGGAGATAGAAGACAACTCGAAGAAAATCGGAGGATTATTTGCGAAATTGAACAGTGGGGACATCTCTAAAAATGCCTCTGATAAGCTCCTTCAGCTCTGTCAGGCATTAGACAAAGGCGATTTCAGTACAGCCCTACAAATTCAGGTCCTACTTACTACAACCGAATGGGATGAATGCCAGTCGTGGCTAGGTTCGCTGAAGCGAATGATCAAGACAAGGCAGAGTGTGAGATAA 3342 0.4536 MACIKGVNRSASVALAPDAPYMAAGTMAGAVDLSFSSSANLEIFKLDFQSDDQELPLVAECPSSERFNRLSWGKSSSASEGFSLGLVAGGLVDGNIALWNPLTLIRSEAKESAFLQHLVRHKGPVRGLEFNTIAPNLLASGAEDGEICIWDLANPSEPSHFPPLRGSGSATQGEISFLSWNSKVQHILASTSYNGTTVIWDLRKQKPVISFADSVRRRCSVLQWNPDFATELVVASDEDGSPAVRLWDMRNIMAPIKEFVGHSRGVIAMSWCPYDSYYLLTCAKDNRTICWDTTSGEIVRELPAGTNWNFDVHWYPKIPGVISTSSFDGKVGIYNVEGCSWYGAGQNDFGAALRAPKWYKRPVGVSFGFGGKLVSFNTKSSATNAPAGASEVYVHNMVTEHSLVSRSSEFEAAIHNGERSLLRVLCDKKSQESESDEERETWGFLKVMFEDDGTARTKLLAHLGFTVPIEEKASVDDLAQEVGAIGLDGTAVDKVGLGPTKESTVFPDTGEDFFNNLPSPRAETPLSTSGGNVDYANRLDKIQEELEVEESDDPTFDDSVQRALVVGDYKGAVEQCISANKWADALVIAHVGGASLWESTRDQYLKRIRSPYLKIVSAMVSKDLLSLVNTRPLKFWKETLALLCSFAQSDEWAMLCDTLASKLMEAGNTLAATLCYICAGSIDHTVEIWSKNLQIEHEGKSYVDVLQDLMEKTIVLALATGQKQFSASLCKLVEKYAEILASQGMLTTAMEYIKLLGSAELSPELIVLKDRISLSTQPEKEVQTTELENTQRQIGSFYSADTSNYGRNYYQESVSPQVQHGASGIPYDENYQQPFDPSYGRGYAGSAPFQQPQQPNLFVPSQAPQVHQAPQPNLTAPVTQPPMRSFVPHTPPALRNVEQYQQPTLGSQLYPAAANPPYQPTPPATSQMGMVHGQKLPHVVAPTPNPRGFATVPSSGVAQRPGIGSIQPPSPPQAAPAQPAPAQIAPAPAAPPPTVQTADTSNVPAHQKLIVTTLTRLFNETSEALGGPRANPAKKREIEDNSKKIGGLFAKLNSGDISKNASDKLLQLCQALDKGDFSTALQIQVLLTTTEWDECQSWLGSLKRMIKTRQSVR 1113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele29g1353 1113 Pfam Sec23-binding domain of Sec16 560 758 IPR024298 -
Lele29g1353 1113 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 118 152 - -
Lele29g1353 1113 Gene3D - 351 776 - -
Lele29g1353 1113 FunFam Protein transport protein SEC31 homolog B 999 1113 - -
Lele29g1353 1113 FunFam Protein transport protein SEC31 homolog B 1 337 - -
Lele29g1353 1113 Gene3D - 1 337 IPR015943 GO:0005515
Lele29g1353 1113 ProSiteProfiles Trp-Asp (WD) repeats profile. 259 301 IPR001680 GO:0005515
Lele29g1353 1113 Coils Coil 532 552 - -
Lele29g1353 1113 Gene3D Functional domain of the splicing factor Prp18 999 1113 - -
Lele29g1353 1113 SUPERFAMILY WD40 repeat-like 12 337 IPR036322 GO:0005515
Lele29g1353 1113 ProSitePatterns Trp-Asp (WD) repeats signature. 138 152 IPR019775 -
Lele29g1353 1113 ProSiteProfiles Trp-Asp (WD) repeats profile. 118 160 IPR001680 GO:0005515
Lele29g1353 1113 SMART WD40_4 111 151 IPR001680 GO:0005515
Lele29g1353 1113 SMART WD40_4 204 248 IPR001680 GO:0005515
Lele29g1353 1113 SMART WD40_4 54 100 IPR001680 GO:0005515
Lele29g1353 1113 SMART WD40_4 295 335 IPR001680 GO:0005515
Lele29g1353 1113 SMART WD40_4 161 201 IPR001680 GO:0005515
Lele29g1353 1113 SMART WD40_4 252 292 IPR001680 GO:0005515
Lele29g1353 1113 MobiDBLite consensus disorder prediction 952 1001 - -
Lele29g1353 1113 FunFam Protein transport protein SEC31 homolog B 352 776 - -
Lele29g1353 1113 MobiDBLite consensus disorder prediction 965 993 - -
Lele29g1353 1113 MobiDBLite consensus disorder prediction 819 855 - -
Lele29g1353 1113 Pfam WD domain, G-beta repeat 115 151 IPR001680 GO:0005515
Lele29g1353 1113 PANTHER SEC31-RELATED PROTEIN 3 1110 IPR040251 GO:0006888
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele29g1353 Lele-ChrLele29 20181540 20194060 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele29g1353 110 345 Miscellaneous Gene Families AT5G08390 24.790 2.14e-13 72.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele29g1353 29 20181540 20194060 Lele31g0222 31 2270703 2288234 hybridization
Lele29g1353 29 20181540 20194060 Lele32g1188 32 12254708 12256584 hybridization