Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele29g0768 ATGTTGATACACAGCTTCTTCACAAGGAGGAGAGTACATTCAGGTACCAATTCGCTGTTGATGGACCCTGACGTTGTGGAAATTCCTCCCCCAATTCATCGCCCTACGAAACTGATGAAACAAAAGGCTATTATTAGTGATGTGATTGACGTTGACAATGATGAGGACTCTGCTGATATAGTGTTTATTGGTGAAAAAGTTGGTGGAAGCAACAAGGGAAAGGAAATGTCACAGGAACATTTTGGACCAGCTAGCGGGCTTGAGTCCTCCAGTGTTTATGCTTCAGTATCACATAATGTAATCAATGTTGATGGTCACAGTTCTGATTTATCAAATGATGATGATGATGACTACAATGATCATTTTGCTGAAGATTTCATGGATGTCGATCAGTACGCCTTGTTACAGGCACACTTTGACCATGTGGATATACCTGCTGGAATTGAGGCACCCATTCCCTGGATGTCAAATTTTGATCCGAAATCTGAAACTAGTTCTTCGAATCCTTGGGGTAATATGCAGTTAGATGGTAAAAGTTCTCATGTGACAGACTTATCTCAGCTTTCCTGGGCAATAGAGTCTTCTGACCTCATCCAAGAAACTCCAGTTTGTAGTTCTAGTTCCCTAACCAAAAATGTTGCTGTTAATCCTTCTTCTCAAAAGTTGTCTTCTCAGTTACATACTGAAGCTGCTCCTGATAAAAAGCAATCAACTTTTGCACAACAGGATGGGCGTAAGCTGAACTTGAATCTAGCACTAGGGGTAGATTCATCCAAACCTCATTGGTTCAAGGGACCTTTCGGTCGTAAGAAGAAGCTTTCTATTTTAGGTGACTTTCATAATGATGCTTTAGCACACAAGTCAGAGTCCTTGAATCTGCCACCTGGAGGTGAACCCCCTTATTGGGGGAAAGCTAAAAGTGCAAAAAAGGCACATGGCAAAGATGTTCTGTTCCATCCGAAATTCTTTCCACCTTTTGAAGGGTCACACCATTTTCCTGGATTGGAATCAGCAAACTCTAATATATGGAAGAATCCTCCTAGCCTGCCTTTTACAGATCATTCAGATAATTTAGGTCTTTATTGTCCATTTGATCCTCTTGATGCCCCTCTTCCAATGTTTGGTAATACTTGGTTTCACAATTATGCCAGTGATGAAAAGAATGAAACCACTGCTAACATCCCAGTTGTGACAATACCTGATGAAGACAGGGATGAAATCTTGAAGAAATTCCAAGATTTTAAACAGTTTGACACAGTTGAAGACGCTTCAGATCATTACTATAATCGCAAGAGTTATTCCTTGAAGCAGAATTCAAAGAATTGGTCTAAGAGAATTCAGGAAGAGTGGAGGATTCTGGAGAAGGATTTGCCTGATTCAATATTTGTTAGAGTTTATGAATCAAGGATGGATATTTTGAGAGCTGTAATTATTGGAGCAGAGGGAACTCCTTATCATGATGGTCTCTTCTTTTTTGATGTTTTCTTTCCCAGTGGCTACCCCAATGTGCCACCGGAAGTCCACTACCACTCTGGTGGTGTTAGGATCAACCCAAATTTGTATAACTGCGGCAAAGTATGCCTTAGTCTGCTTAATACTTGGTCTGGCAATAAGAATGAGAAGTGGCTTCCTGGTGTTTCAACAATTCTACAGGTTCTTGTTTCTATACAAGGTTTAATCTTGAATACAAAGCCTTATTTTAATGAGCCTGGGTATGCTCATATGAGTGGTTCTACTGCTGGCGAACTGAGGTCCCTGCAGTATAATGAGGATGCATTTATTCTATCATTGAAGACAATGACGTACGTGATGAGAAAGCCTCCAAAGCATTTTGAGGACTTCGTTGCAGGGCATTTCTGCAACCGGGCTCACGATATCTTGGTGGCGTGTAAAGCATACATAGAAGGTGCTCAAGTTGGCTGTTTGGTCAAAGGTGGGGTGCAGGATGTTGACGCGGGTGACCGGAGCTGCTCGAAGCAGTTTAAGGATACTTTAGCTGGATTTGTGAATAGGCTCGTCGGAGAATTTTCCAAAGTTGGAGCTAAGGACTGTGAGAAATTCTTGCCGCAGGCGGCGACAACTGGGAACAATCTGGCAGGTTGTTGCCCTGATGCTGCCGCTGTTCCTGCTATCTCAACGCTCTCTCCTGAAGCCCAATTTTGA 2163 0.4216 MLIHSFFTRRRVHSGTNSLLMDPDVVEIPPPIHRPTKLMKQKAIISDVIDVDNDEDSADIVFIGEKVGGSNKGKEMSQEHFGPASGLESSSVYASVSHNVINVDGHSSDLSNDDDDDYNDHFAEDFMDVDQYALLQAHFDHVDIPAGIEAPIPWMSNFDPKSETSSSNPWGNMQLDGKSSHVTDLSQLSWAIESSDLIQETPVCSSSSLTKNVAVNPSSQKLSSQLHTEAAPDKKQSTFAQQDGRKLNLNLALGVDSSKPHWFKGPFGRKKKLSILGDFHNDALAHKSESLNLPPGGEPPYWGKAKSAKKAHGKDVLFHPKFFPPFEGSHHFPGLESANSNIWKNPPSLPFTDHSDNLGLYCPFDPLDAPLPMFGNTWFHNYASDEKNETTANIPVVTIPDEDRDEILKKFQDFKQFDTVEDASDHYYNRKSYSLKQNSKNWSKRIQEEWRILEKDLPDSIFVRVYESRMDILRAVIIGAEGTPYHDGLFFFDVFFPSGYPNVPPEVHYHSGGVRINPNLYNCGKVCLSLLNTWSGNKNEKWLPGVSTILQVLVSIQGLILNTKPYFNEPGYAHMSGSTAGELRSLQYNEDAFILSLKTMTYVMRKPPKHFEDFVAGHFCNRAHDILVACKAYIEGAQVGCLVKGGVQDVDAGDRSCSKQFKDTLAGFVNRLVGEFSKVGAKDCEKFLPQAATTGNNLAGCCPDAAAVPAISTLSPEAQF 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele29g0768 720 Pfam Ubiquitin-conjugating enzyme 445 569 IPR000608 -
Lele29g0768 720 Gene3D Ubiquitin Conjugating Enzyme 401 678 IPR016135 -
Lele29g0768 720 PANTHER (E3-INDEPENDENT) E2 UBIQUITIN-CONJUGATING ENZYME 131 683 - -
Lele29g0768 720 MobiDBLite consensus disorder prediction 217 242 - -
Lele29g0768 720 FunFam Probable ubiquitin-conjugating enzyme E2 23 404 680 - -
Lele29g0768 720 SMART ubc_7 444 601 - -
Lele29g0768 720 CDD UBCc 443 570 IPR000608 -
Lele29g0768 720 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 441 601 IPR000608 -
Lele29g0768 720 SUPERFAMILY UBC-like 430 610 IPR016135 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele29g0768 Lele-ChrLele29 4965471 4970632 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele29g0768 390 691 Miscellaneous Gene Families AT2G33770 46.497 2.66e-85 286
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele29g0768 29 4965471 4970632 Lele31g0773 31 15434333 15440871 hybridization
Lele29g0768 29 4965471 4970632 Lele32g0743 32 4791175 4799350 hybridization