Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele29g0514 ATGAAGCCTTTACTCTCTTATCTCTCTCTACACCTAAAAGGCAGTCGGCTATTTCACGCTCTGGATAAGCTTATCCCTCCCAAACAACCTTTCGAGCTCAAAAGCTACTGCTTTCTCTTTGACCTTTCTCTTCCCAATAGAAACCACCGTGCCGCAAGTCCTCTGACTCTGATTACACCACCTCGCTCTCTCCCATTGCTATTGTTCCCTTCCATGGCCGCTGTTACCTCTTTGTCCTTCTCCGCGTTAACCCAATGTTCTGAAAGAAAGCCAGCTTTCGCCTCCACTCGCTTCCTCGGATTCAATTCGGAGGCGTTACGATTTCGGACGAATATTTCTTACCACTATGCTGCTGTTGGAGCTTCCAATTCCGCTTCTAAGATGCTTATTCAGTGCATGTCTTCTGCGACAGATGTTCCCACTGTATCTGAGACAAAATCTAATTTCCTCAAGGCTTATAAACGACCGATCCCTAGTATCTACAACACTGTGCTGCAGGAGCTCATTGTTCAGCAGCATTTAATGAGATACAAGAGATCTTACCGTTATGACCCTGTATTTGCTCTTGGTTTTGTTACTGTGTACGATCAACTCATGGATGGGTATCCTAGTGATGAAGATCGAGATGCCATCTTCCAGGCATATATCAAGGCGTTGGAGGAAGAGCCAGAACAATATAGAATAGATGCAAAGAGGTTGGAAGCGTGGGCCCGGGCTCAGAACCCAAATTCCCTAGTTGAGTTTTCTTCCAGAGAAGGAGAGGTGGAGGGAATATTGAAGGATATTGCAGAAAGAGCAGGTGGAAAGGGGTATTTCAGCTATAGTCGTTTCTTTGCAGTAGGCCTATTTCGACTTCTTGAGTTGGCAAATGCAACAGAACCGGCCATTTTGGACAAGCTTTGTGCAGCCTTGAACATCAACAAAAGAAGCGTTGATCGGGATTTGGATGTGTACCGTAATCTGCTTTCCAAGTTGGTTCAGGCAAAAGAATTGCTAAGGGAATATGTTGACAGGGAGAAGAAGAAAAGAGAAGAAAGGAATGAAACTCAAAAGGCTAATGAGGCCATTTCAAAATTTTTGGGACAAAGTATCAACGTTCCTGCCACTAGACATTAA 1116 0.4453 MKPLLSYLSLHLKGSRLFHALDKLIPPKQPFELKSYCFLFDLSLPNRNHRAASPLTLITPPRSLPLLLFPSMAAVTSLSFSALTQCSERKPAFASTRFLGFNSEALRFRTNISYHYAAVGASNSASKMLIQCMSSATDVPTVSETKSNFLKAYKRPIPSIYNTVLQELIVQQHLMRYKRSYRYDPVFALGFVTVYDQLMDGYPSDEDRDAIFQAYIKALEEEPEQYRIDAKRLEAWARAQNPNSLVEFSSREGEVEGILKDIAERAGGKGYFSYSRFFAVGLFRLLELANATEPAILDKLCAALNINKRSVDRDLDVYRNLLSKLVQAKELLREYVDREKKKREERNETQKANEAISKFLGQSINVPATRH 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele29g0514 371 Coils Coil 318 348 - -
Lele29g0514 371 TIGRFAM PS_II_psb29: photosystem II biogenesis protein Psp29 138 343 IPR017499 GO:0010207|GO:0015979
Lele29g0514 371 Hamap Protein Thf1 [thf1]. 136 344 IPR017499 GO:0010207|GO:0015979
Lele29g0514 371 Pfam Thylakoid formation protein 141 346 IPR017499 GO:0010207|GO:0015979
Lele29g0514 371 PANTHER PROTEIN THYLAKOID FORMATION 1, CHLOROPLASTIC 72 364 IPR017499 GO:0010207|GO:0015979
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele29g0514 Lele-ChrLele29 3114178 3118165 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele29g0514 29 3114178 3118165 Lele31g1030 31 17278403 17283504 hybridization
Lele29g0514 29 3114178 3118165 Lele32g0487 32 3067644 3070326 hybridization