Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele29g0462 ATGGCTGCATCTTTCTCTGCGCCCTCATTGATAATGGAGGAGGAAGCAAGGTTTGAAGCTGAAGTAGCAGAGGTGCAAGCATGGTGGAACTGGGAGCGGTTCAGGCTAACCCGGCGACCATATTCTGCTAGGGACGTTGTGGCACTGCGAGGCAACCTCAGGCAAACCTATGCGTCCAACGAAATGGCGAAGAAGCTATGGCGAACCCTCAAGACCCACCAAGCCAATGGCACAGCCTCAAGGACCTTCGGTGCACTAGACCCTGTTCAGGTCACCCAAATGGCTCCCCACTTGGATACCCTCTACGTCTCCGGCTGGCAATGCTCCTCCACCGCCGCCACCACCAACGAACCCGGCCCCGACCTCGCCGATTACCCTTACGACACAGTCCCCAACAAGGTTACGTTAATACATCAGTCCTATTATATAATGTCACTCAAAGTGAAACGCAACAATTATCATAACGTACATAAGATGAATAAATCAATAAACTATGATCTACGTACATTTCAGGTTGAACACCTATTCTTCGCCCAGCAATTCCATGACCGGAAACAGAGAGAAGAAAGAATGAGAATGAGCAGAGAAGAGAGAGCCAGAACCCCTTACGTTGATTACTTGAGACCCATCATAGCCGATGGCGATACTGGCTTTGGTGGCACTACAGCCACCGTCAAGCTCTGCAAGCTTTTCGTTGAATGTGGTGCTGCTGGTGTTCACATTGAAGATCAATCCTCTGTGACCAAAAAATGTGGTCACATGGCGGGAAAAGTTCTAGTAGCCATTAGTGAACACATCAACAGGCTCGTGGCTGCAAGGCTGCAATTTGATGTAATGGGAGTGGAAACGGTACTCGTGGCTCGAACTGATGCAGAAGCAGCGACACTGATTCAGTCTAATATAGACACAAGGGACCATCAGTTTATACTGGGAGTGACCAACCCTAGCCTGAGAGGAAAAGGCTTGGCCACTCTCATGGCAGAGAACATGGCTGCTGGGAAAAACGGAGCTGAGCTTCAGGCTATTGAAGACCAGTGGCTATCAATAGCAAAGTTGAAAACTTTTTCTGAGGCAGTTGAGGATGCAATTAAGAGCATGAAAATAGGGGGAGAAGATAAGAAAAGGAGGTTGAATGAATGGATGAGATATTCTAGTTATGAGAAGTGTTTGTCCAATGAGGAAGGAAGAGAGATTGCAGAGAGATTGGGACTGAGAAACCTGTTCTGGGATTGGGACTTGCCAAGAACAAGAGAAGGATTTTACAGATTCAAAGGGTCTGTTAAAGCAGCAATTGTACGTGGATGGTCTTTTGCTCCACATGCAGATTTGTTATGGATGGAAACCAAAGGCCCAAATTTGGTTGAGTGCACTCAATTTGCTGAAGGTGTTAAGTCTAAACACCCAGAGATGATGCTGGGTTATAATCTGTCTCCATCATTTAACTGGGATGCTTCTGGAATGAGTGATGAACAAATGATCGAGTTCATACCCAGAATTGCAAAGTTGGGGTATGTGTGGCAGTTCATAACAGTGGGTGGTTTACACTCAAATGCACTAATTACTTCAACATTTGCAAGGGATTTTGCAAACAGGGGAATGCTGGCTTATGTGGAGAAGATTCAGAGAGAGGAGAGGAATAATGGGGTTGATACACTTGCTCATCAGAAATGGGCAGGGGCTAATTATTATGATAAGTATCTCAAGACCGTTCAGGGAGGAGTGACTGAAGAGCAATTCAAGCAAACATGGACTAGGCCTGGAACTGTGGATATGGGTGGAGGGGGTAATGTGGTCGTTGCTAAGGCCAGAATGTAG 1815 0.4667 MAASFSAPSLIMEEEARFEAEVAEVQAWWNWERFRLTRRPYSARDVVALRGNLRQTYASNEMAKKLWRTLKTHQANGTASRTFGALDPVQVTQMAPHLDTLYVSGWQCSSTAATTNEPGPDLADYPYDTVPNKVTLIHQSYYIMSLKVKRNNYHNVHKMNKSINYDLRTFQVEHLFFAQQFHDRKQREERMRMSREERARTPYVDYLRPIIADGDTGFGGTTATVKLCKLFVECGAAGVHIEDQSSVTKKCGHMAGKVLVAISEHINRLVAARLQFDVMGVETVLVARTDAEAATLIQSNIDTRDHQFILGVTNPSLRGKGLATLMAENMAAGKNGAELQAIEDQWLSIAKLKTFSEAVEDAIKSMKIGGEDKKRRLNEWMRYSSYEKCLSNEEGREIAERLGLRNLFWDWDLPRTREGFYRFKGSVKAAIVRGWSFAPHADLLWMETKGPNLVECTQFAEGVKSKHPEMMLGYNLSPSFNWDASGMSDEQMIEFIPRIAKLGYVWQFITVGGLHSNALITSTFARDFANRGMLAYVEKIQREERNNGVDTLAHQKWAGANYYDKYLKTVQGGVTEEQFKQTWTRPGTVDMGGGGNVVVAKARM 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele29g0462 604 FunFam Isocitrate lyase 300 415 - -
Lele29g0462 604 TIGRFAM isocit_lyase: isocitrate lyase 171 575 IPR006254 GO:0004451|GO:0019752
Lele29g0462 604 ProSitePatterns Isocitrate lyase signature. 249 254 IPR018523 GO:0003824
Lele29g0462 604 CDD ICL_PEPM 75 295 IPR039556 GO:0003824
Lele29g0462 604 Gene3D - 300 415 - -
Lele29g0462 604 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 11 142 IPR015813 GO:0003824
Lele29g0462 604 PIRSF ICL 12 163 IPR006254 GO:0004451|GO:0019752
Lele29g0462 604 PIRSF ICL 177 366 IPR006254 GO:0004451|GO:0019752
Lele29g0462 604 PIRSF ICL 407 583 IPR006254 GO:0004451|GO:0019752
Lele29g0462 604 PANTHER ISOCITRATE LYASE/MALATE SYNTHASE 169 576 IPR006254 GO:0004451|GO:0019752
Lele29g0462 604 Pfam Isocitrate lyase family 169 575 IPR006254 GO:0004451|GO:0019752
Lele29g0462 604 Pfam Isocitrate lyase family 21 145 IPR006254 GO:0004451|GO:0019752
Lele29g0462 604 Gene3D - 9 573 IPR040442 -
Lele29g0462 604 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 165 573 IPR015813 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele29g0462 Lele-ChrLele29 2829797 2831887 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele29g0462 29 2829797 2831887 Lele31g1083 31 17639632 17641762 hybridization
Lele29g0462 29 2829797 2831887 Lele32g0442 32 2794049 2795907 hybridization