Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele29g0343 ATGGCTATAAATAGAATGTTGGAAGAAGAGTACGTATATCACTCAATCTTCCTAAAAAGAAACGAGAAAGTGTGCTTGTTCAGAATGGAGTTGGAGAGTGTCACACGGTTTCTCAGGGGAAAGACCATATTGGTCACCGGTGCAACAGGCTTCTTGGCAAAAGTATTTGTGGAGAAGTTACTAAGGATTCAACCAGATTTGAAGAAAATGTATCTTCTTATCAGAGCTTCTGGCCCTGAGGCAGCCACACAACGCATGCAGGATGAGATTATAAGGAAGGAGGTGTTTAGAGTTGTACGAGAGAAGTGGGGCGCAGATTTTGAATGTTTGATAGCAGAGAAGGTAGTTGCTGTTGCAGGAGATGTTTCTGCTGTAAATTTGGGGATTAAAAATGAAAATCTTGAAAAGATGTGGGAAGAAATAGACGTTATTACCAACTTTGCTGCAAATACCAATTTTGATGAAAGATTCGACATCGCAATGGAGATTAACACGATGGGGGCTTTGCATGTGTTAAATTTCGCCAAGAGTTGCAGTAGGGTCCAGGTTTTTCTTCAAGTATCAACTGCTTATGTTTGCGGAGAGCCTAAGGAAGGAGAAGTGATTAAAGAGGAACCTTTTCGGATGGGTCAAACCCTAAACAGGACCTCAAAAGTTTTGGACATTCAGGCTGAAAAGAATTTGATGCAAACAACAATTGAACAACTCAGATCACAATATAGTGGCAATGACATAGCTATTACGTCTGCAATGAAAGATTTTGGAATTCAGAGAGCAAACTTGTACGGATGGCCAAACACTTACGTTTTCACAAAAGCAATGGGAGAGATGTTGCTGTCGCATTTCAAGAATGAGATTCCATTAGTTATTATACGTCCCACAATGATCACAAGTACCTACAAGGAACCCTTCCCTGGTTGGATTGAAGGTTTAAAAACACTTGATGCTGTAATTGGTGGCTATGGTAAAGGAAAAGTAGGATGCTTTCTTGGTCATCCCCAGGCAATTTTGGATGCGATACCAGCGGATATGGTGACAAATTGTATTCTGGCGGCAATGGCAATTCACTCAAATAAAACATCAGACAAATACATATACCATGTTAGTTCATCATTAAGAAATTCCCTCACAGTTTCTTGTGTCCATGATCTTACCTATCTTTATTTCAAAAACAAACCCTTGACTAACAAAAGTGGAAAGCCAATAATCATATCCAAGGGAATCTTTTTACCAACTATGGCTAGTTTTCATGCTCACGTGATGATCCGATATGTTCTCCCTCTCAAGGTATTATATTTGGCGAACCATGTGTTTTGCAAGATCTTCAAGGATGTTTATAATCGAAGTGATAGAAGATTAAAAATGGTGATACGAATGATCGAGCTCTACAAACCCTATGTATTTTTCAGGGCATTTTTTGATGATACGAACGCAGAAGAATTACGAGAAAAAACGAAGATTCTAAAGGATGTTGGATTTGATTTAGAGTTTGATCCCAAGAGCATAGATTGGACGGACTATTTGATGAATGTCCACGTTCCTGGCCTTGTCAACTACGCAATTAATCCATCTCCCAAATTGCCCAAATACTGA 1593 0.393 MAINRMLEEEYVYHSIFLKRNEKVCLFRMELESVTRFLRGKTILVTGATGFLAKVFVEKLLRIQPDLKKMYLLIRASGPEAATQRMQDEIIRKEVFRVVREKWGADFECLIAEKVVAVAGDVSAVNLGIKNENLEKMWEEIDVITNFAANTNFDERFDIAMEINTMGALHVLNFAKSCSRVQVFLQVSTAYVCGEPKEGEVIKEEPFRMGQTLNRTSKVLDIQAEKNLMQTTIEQLRSQYSGNDIAITSAMKDFGIQRANLYGWPNTYVFTKAMGEMLLSHFKNEIPLVIIRPTMITSTYKEPFPGWIEGLKTLDAVIGGYGKGKVGCFLGHPQAILDAIPADMVTNCILAAMAIHSNKTSDKYIYHVSSSLRNSLTVSCVHDLTYLYFKNKPLTNKSGKPIIISKGIFLPTMASFHAHVMIRYVLPLKVLYLANHVFCKIFKDVYNRSDRRLKMVIRMIELYKPYVFFRAFFDDTNAEELREKTKILKDVGFDLEFDPKSIDWTDYLMNVHVPGLVNYAINPSPKLPKY 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele29g0343 530 Pfam Male sterility protein 424 521 IPR033640 -
Lele29g0343 530 Pfam Male sterility protein 45 349 IPR013120 -
Lele29g0343 530 Gene3D - 29 395 - -
Lele29g0343 530 CDD FAR-N_SDR_e 41 393 - -
Lele29g0343 530 PANTHER MALE STERILITY PROTEIN 2-RELATED 34 522 IPR026055 GO:0080019
Lele29g0343 530 Coils Coil 219 239 - -
Lele29g0343 530 CDD FAR_C 422 519 IPR033640 -
Lele29g0343 530 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 35 358 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele29g0343 Lele-ChrLele29 2080684 2084465 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele29g0343 36 430 Acyl Lipid Metabolism Gene Families AT5G22500 53.149 1.80e-149 432
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele29g0343 29 2080684 2084465 Lele31g1196 31 18397221 18400134 hybridization
Lele29g0343 29 2080684 2084465 Lele32g0331 32 2061575 2065429 hybridization