Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele29g0028 ATGGCTGTGAACGATGCTGACCAATCACATAAGCCTCACAGGTCTCGTCAGTCTGGCGCAAAAAAGGCCAAATCGGATAAGAAGAAGAAGCAAGAAGTTGGCGATGACCATCACAAACAAAATCCTAAGGCGTTTGCTTTTACGTCTTCCACGAAAGCCAAAAGATTACAATCCCGCGCCGTCGAGAAAGAGCAGCGTCGTCTTCATGTTCCAATTATTGACCGGTCTTATGGTGAGCCAGCACCTTATGTCGTTGTGGTGCAGGGTGCGCCGAAGGTTGGGAAGTCGCTCTTAATAAAGTCCTTGGTAAAACATTATACGAAGCAAAATTTGCCTGATGTTCGAGGTCCAATAACCATTGTATCAGGAAAGCAGAGGCGACTGCAGTTTGTGGAATGCCCAAATGATATCAATGGCATGATAGATGCCGCAAAATTTGCAGATCTAGCATTGCTTCTCATAGATGGGAGCTATGGTTTTGAAGTGGAAACCTTTGAATTCCTTAATATATTACAACTTCATGGGTTCCCAAAGGTCATGGGTGTTCTGACTCATCTTGATAAGTTCAAGGATGCTAAAAAGTTGAAGAAAACAAAGCAACGTCTTAAACACCGTTTCTGGACTGAAATATACGATGGAGCTAAATTGTTTTATTTATCTGGTCTTATTCATGGAAAGTATCCAAAGCGTGAGGTGCACAATCTTGCCCGCTTTATTTCTGTTATGAAGTTTCATCCTCTATCTTGGCGAACTTCCCACCCTTATGTTTTGGTGGACCGGTTTGAAGATATCACTCCTCCTGAAAGAGTTATAGAAAATAAGAAATGTGACAGAACAGTCACACTTTATGGTTATCTGAGAGGGTGTAATTTGAAAAGGGGAAATAAGGTGCACATAGCAGGAGTGGGTGATCATATTTTAGCTGCAATCACTCTGTTACCTGATCCTTGTCCTCTACCATCTGCTGCAAAGAAGAAGGGGCTTCGAGATAGGGAAAAGTTATTCTACGCTCCCATGTCTGGCCTTGGAGATCTTCTTTATGACAAAGATGCTGTGTACATAAATATTAATGATCACTTTGTCCAGTTTTCAAAAGTTGACGATGAAAACTCATCCATGGCGGGCAAAGGAAAGGACAGAGATGTAGGGGAGGCTTTGGTGAGATCACTGCAGAATACTAAGTACTCAATCAATGAAAAACTAGAGAATAGCACTATCAATCTTTTTAGTCAAAAGTTAAACGTGTCATCAGAAGCACTACATGACGCACAAGGTAGAAATGTAGAAAATAATGAAATGGATATGGATGGCCCAGAATCTGATCAAGATGAAGCCGTTCCACCCAATGCCATAACAGACAGTGAAACTAGTGGTTCTGAAGAAGAGAGTGACACAAGAGATGGTAAAGCTGCAATTGGAGATCACTTAAAAGAATGTGTTGAGTTTCATGGTGGAAGACTGAGGAGAAGAGCAGTGTTTGGAAATGATGTGGATCAAAATGTTTCGAAGGATTCAGATGAAGAGGACGGGGCTGTCAGTGATGACCCAGCATCATCTGACTCGGAATTTTCAGAAGAGAGCCATGATGATGATGCAGATGGTACAGTTCTTCATCTCATTGTTAAGATTTACGATGTGGGAGAGGTTTCAAAGTGGAAAGAGTTGTTGGCTGAAAGAACTATCTTACGTCAAAATCCTAGCCTGATGCAACTTGTGTATGGGAAGTCTACTGTTAATTCAACCAATATGAACAAAGAGGATGACGGTAGTGAGGATGAAGAAAGTGAAGATGAATTTTTTAAGCCTAAAGAGGAAGTGAGAAAGCAAAAAATGAGAGAGGGATTAGATGATGAAAATGTCAACACTGAGGACTGTTCCAAGACTGCAAAGTTTGCGGATGTTAAATGCTGGGAAGACAAAGATTTTGAGCAAATTCGTGATCGTTTCGTTACTGGTGACTGGTCAAAAGCTGCACTTAGAAACCAAGTATCTGAGGCTACTACTGGAGATGAATTTGATGCTGTCTATGGTGACTTTGAAGATTTAGAAGCTATAGAGAAGTATGAGAGTCATCAGACAGATAATGAAGTTGTTGAAATGTTGAAGGAGGAAATTGAACTTCGGAAACAGAAGAATATAGCTGAACTCGATGATCTTGACGAGGCTACCCGAATAGAGATAGAAGGCTTTCAAACAGGAAGTTACCTAAGATTGGAGGTTCATGATGTCCCCTATGAGATGGTTGAATACTTTGATCCTTACCACCCAATATTAGTAGGAGGCATTGGTCTTGCGGAGGAAAATGTCGGATACATGCAGGCTAGGTTCAAGCGGCATAGATGGCACAAGAAAGTTCTCAAGACTAGAGATCCTATAATTGTTTCTGTTGGATGGAGGCGTTACCAGACAACACCGGTTTATGCTATTGAGGATCGTAATGGGAGGCATCGTATGCTTAAATACACTCCAGAACATATGCATTGCTTGGCTATGTTTTGGGGCCCTCTTGCCCCTCCCAATGCTGGGATAGTTGCTGTTCAGAATTTATCAAACAATCAGGAATCATTTAGGATTACAGCAACTGCTGTTGTACTTGAATTTAATCATGCAGTAAGGATAGTGAAGAAAATAAAGTTGGTTGGTTACCCTTGTAAGATCTTCAAGAAGACTGCACTTATCAAAGATATGTTCACTTCGGATCTTGAAGTGGCTCGGTTTGAAGGTGCAGCTATTCGAACAGTCAGTGGGATCAGGGGGCAGGTCAAGAAGGCTGTAAAAGAAAATATCCATAAGCGGTCAAAGAATGGAGTCAATCCCAAAGAAGGAATTGCTCGTTGCACCTTCGAGGACAAAATTTTGATGAGTGACATCGTTTTCTTGCGTGCATGGACTCAAGTTGATGTTCCTCAGTTTTTTAATCCCTTAACAACAGCATTACGGCCTCGTCAGCAGACCTGGCAAGGAATGAAAACAGTTGCTGAATTGAGAAAGGATTTCGAGCTTCCTGTACCTGTGAATAAAGATTCACTTTACAAGAAAATTGAAAGAAAGCCACGGAAGTTCAATCCATTGGTAATTCCCAAGTCTCTACAGGAATCACTTCCTTTTATGTCAAAACCTAAAGATATATCTAGTGGAAAGCGACGGTCACTTGCTGAGAGAAGGGCTGTTCTTCGGGATACTCATGAGCGTAAAGTTCATGCTCTTGTACAACAGCTCCAATTAATTAGAAATGAGAAGTTGAAAAAGCGAAAGCAGAAAGAGGAGGAGAAGAGGAAAGAACACGAAGCTGAGAGGGCAAAAGATGAGCAGTTGCAAAGAAAACGCCAAAGAGAGGAAAGGCGAGAGAGATATCGCGCGCAAGAAAAACAGAAGAAAATCCGGAGAGCAGAGGTATGA 3399 0.4157 MAVNDADQSHKPHRSRQSGAKKAKSDKKKKQEVGDDHHKQNPKAFAFTSSTKAKRLQSRAVEKEQRRLHVPIIDRSYGEPAPYVVVVQGAPKVGKSLLIKSLVKHYTKQNLPDVRGPITIVSGKQRRLQFVECPNDINGMIDAAKFADLALLLIDGSYGFEVETFEFLNILQLHGFPKVMGVLTHLDKFKDAKKLKKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYPKREVHNLARFISVMKFHPLSWRTSHPYVLVDRFEDITPPERVIENKKCDRTVTLYGYLRGCNLKRGNKVHIAGVGDHILAAITLLPDPCPLPSAAKKKGLRDREKLFYAPMSGLGDLLYDKDAVYININDHFVQFSKVDDENSSMAGKGKDRDVGEALVRSLQNTKYSINEKLENSTINLFSQKLNVSSEALHDAQGRNVENNEMDMDGPESDQDEAVPPNAITDSETSGSEEESDTRDGKAAIGDHLKECVEFHGGRLRRRAVFGNDVDQNVSKDSDEEDGAVSDDPASSDSEFSEESHDDDADGTVLHLIVKIYDVGEVSKWKELLAERTILRQNPSLMQLVYGKSTVNSTNMNKEDDGSEDEESEDEFFKPKEEVRKQKMREGLDDENVNTEDCSKTAKFADVKCWEDKDFEQIRDRFVTGDWSKAALRNQVSEATTGDEFDAVYGDFEDLEAIEKYESHQTDNEVVEMLKEEIELRKQKNIAELDDLDEATRIEIEGFQTGSYLRLEVHDVPYEMVEYFDPYHPILVGGIGLAEENVGYMQARFKRHRWHKKVLKTRDPIIVSVGWRRYQTTPVYAIEDRNGRHRMLKYTPEHMHCLAMFWGPLAPPNAGIVAVQNLSNNQESFRITATAVVLEFNHAVRIVKKIKLVGYPCKIFKKTALIKDMFTSDLEVARFEGAAIRTVSGIRGQVKKAVKENIHKRSKNGVNPKEGIARCTFEDKILMSDIVFLRAWTQVDVPQFFNPLTTALRPRQQTWQGMKTVAELRKDFELPVPVNKDSLYKKIERKPRKFNPLVIPKSLQESLPFMSKPKDISSGKRRSLAERRAVLRDTHERKVHALVQQLQLIRNEKLKKRKQKEEEKRKEHEAERAKDEQLQRKRQREERRERYRAQEKQKKIRRAEV 1132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele29g0028 1132 SMART DUF663_2 671 966 IPR007034 -
Lele29g0028 1132 Coils Coil 702 722 - -
Lele29g0028 1132 MobiDBLite consensus disorder prediction 498 531 - -
Lele29g0028 1132 Pfam 40S ribosome biogenesis protein Tsr1 and BMS1 C-terminal 686 967 IPR007034 -
Lele29g0028 1132 MobiDBLite consensus disorder prediction 25 42 - -
Lele29g0028 1132 MobiDBLite consensus disorder prediction 579 620 - -
Lele29g0028 1132 Pfam AARP2CN (NUC121) domain 231 316 IPR012948 GO:0005634|GO:0042254
Lele29g0028 1132 MobiDBLite consensus disorder prediction 1080 1132 - -
Lele29g0028 1132 FunFam BMS1 ribosome biogenesis factor 83 245 - -
Lele29g0028 1132 Gene3D - 83 245 IPR027417 -
Lele29g0028 1132 MobiDBLite consensus disorder prediction 1 64 - -
Lele29g0028 1132 MobiDBLite consensus disorder prediction 600 620 - -
Lele29g0028 1132 MobiDBLite consensus disorder prediction 424 468 - -
Lele29g0028 1132 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 81 218 IPR027417 -
Lele29g0028 1132 PANTHER RIBOSOME BIOGENESIS PROTEIN 6 1115 IPR039761 GO:0042254
Lele29g0028 1132 SMART aarp2cn2 231 317 IPR012948 GO:0005634|GO:0042254
Lele29g0028 1132 ProSiteProfiles Bms1-type guanine nucleotide-binding (G) domain profile. 81 245 IPR030387 -
Lele29g0028 1132 Coils Coil 1059 1121 - -
Lele29g0028 1132 CDD BMS1 44 274 IPR037875 GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele29g0028 Lele-ChrLele29 185652 197904 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele29g0028 29 185652 197904 Lele31g1514 31 20360310 20366745 hybridization
Lele29g0028 29 185652 197904 Lele32g0028 32 193162 200967 hybridization