LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele28g1388	ATGGAAGATCTCAAGCCAAACGCTGCAAACTCTTCTCCTCTCACTCCTTTAGGTTTCCTCGACAGAGCTGCCACAGTCTACGGTGATTGCACTTCTATCATCTATCACGACATCACTTTCACTTGGTCCCAAACCCGCCGTCGCTGTCTCCAGCTAGCTTCCTCTCTTTCCTCCATCGGAATCCGTCGCGGCCATGTCGTCTCCGTTGTGGCACCCAACATCCCCGCCATGTATGAGCTCCACTTCGCAGTTCCCTTCGCAGGCGCCGTCCTCAACAACATCAACACCCGCCTCGACGCTCGCACCATCTCCATCATACTCCGCCATGGTGAATCCAAGCTTGTCTTCGTCGATTGCGTCTCACGCGCTCTGATCCTCGAGGCCATCTCCTTGCTGCCTCCGACTACTCCACGGCCTATCCTTATACTCATCACTACCGCCTCAATGGAACCCACATCATCAGAAGGCTTCTTGGATACGTACGAGGGGTTACTAAAGAAGGGTGATCCGAATTTCCAGTGGATCCGACCCGAAAGCGAGTTGGATCCCGTGATCTTGAATTACACTTCGGGGACGACGTCGTCTCCCAAGGGAGTGGTTCATTGCCACCGAGGGATTTTCTTGGTCACCGTCGATTCTCTGATTGATTGGGCCATCCCCAAACAACCGGTCTACCTCTGGACGCTGAATATGTTCCACGTTAATGGGTGGAGCTTCGCTTGGGGAATGGCAGCCGTCCGAGGAACCAATGTCTGCGTCCGTAAATTCGATGCCGCTACAGTGTTTAATCTGATCGAACGCCACGGTGTCACACACATGTGCGCAGCACCGGTGGTGCTCAACATGCTAACAAACTCCTCAACAAGAAAAACTCTCAGAAACCCCGTTCATATCCTCACATCAGGAGCACCACCACCTGCGACGGTTCTGCAGCGATCGGAAGCGTTAGGATTTGTGGTCACTCACGGGTATGGCGTGGAGGTGGAATCGATGCTGTACAGCAACCCGGCGGTTAATGAGGCGGCGGTGGTGGCGGGGCCGGACGAGTTCTGGGGAGAGACACCCTGCGCTTTCGTGAGCCTGAGGGTTGGATTGGAGAAGAAGCCGACGGAGAAAGAGATAATGGAGTATTGCAAGGCGAGAATGCCGCACTTCATGGCGCCGAAGTCGGTTGTGTTCAAGGAGGAACTTCCAAAGACTTCGACTGAGATTCCACGTCCTATCCTTATACTCATCGCTGACGACTCAGTGGAACTCACATCATCCGAGGGCTTCTACGACACGTACGAGGGGTTGGTCGAGAAGGGTGATCCGAATTTCCAGTGGATCCGACCCAAAAGCGAGTTGGATCCTATTACCTTGAATTACACTTCGGGTACGACGTCCACCGGTGGTGCTCAACATGATAACAAACTCTGCAAGCAAGAAACCTCTGAGAAGTCCCGTTCAAGTCCTCGCCGGTGGAGCACCGCCACCAGCGTCAGTGTTGCACCGAACGGAAGCCGTGGAGGTCGAATCGGTGCTGTACAGCAACCCCGTGGTAAACGAGGCAGCGGTGGTGGCGAGGCCGGACGAGTTCTGGGGAGAGACGCCGTGCGCGTTTGTGCGCTTGAAGGAGGGATTGAAGAAAAGGCCGACGGAGAAGGAGATAATGGAGTATTGCAGAGAGAGGATGCCACACTTCATGGTGCCGAAGACGGTGGTGTTCAAGGAGGATCTTCCAAAGACTTCGACTGATTTTCAGGTGATCAACTTTACATAGCACGAGCTGTGTCTTGTGTAGTTGAAGCGAGTAAGTACTTCTTCGTCTTCATCCTCGACATGGAAGATATCAAGCCACACACTGTAAACTCTTATCCGCTCACTCCATTAGGCTTCCTCGACAGAGCTTCCACCGTCTACGGCGGATGCACTTCTATCATCTATAACAACACCTCCTTCACTTGGTCCCAAACCCACCGTCGCTGTCTCCAACTAGCCTCCTCTCTCTCCTCCATCGGAATCCGTCGTGGTCATGTCGTCTCCGTCGTGGCACCCAACATCCCCGCCATGTACGAGCTCCACTTCGCAGTTCCCTTCGCCGGCGTCGTCCTCAACAACATCAACACTCGCCTTGACGCTCGCACTATCTCCATCATCCTCCGCCATGGTGAATCCAAGCTCGTGTTTGTTGATTGCGTCTCACGCGCTCTTGTACTCGACGCCATCTCCTTGCTGCCTCCAGAGACTCAACGGCCTATTCTTGTACTCATCACTGACGACTCAGTGGAACCCACATCATCAGAGGGCTTCTTTGATACTTACGAAGGATTGGTGGCGAAGGGTGATCCGAATTTCCAGTGGATCCGACCCAAAAGCGAGTGGGATCCGATGCTCTTGAATTACACGTCCGGTACGACGTCGTCTCCGAAAGGGGTGGTTCATTGCCATCGAGGTACGTTCGTCGTAACCGTCGATTCTCTGATTGATTGGGCCATGCCCAAACAACCGATCTACCTCTGGACGCTGAATATGTTCCACTCTAACGGTTGGAGCTTCCCCTGGGGAATCGCAGCCATGGGAGGAGCCAATATCTGCCTCCGTAAATGCGATGCCACCACCGTGTTCACTCTGATCGAACGCCATGGCGTTACCCACATGTGCGCTGCCCCGGTGGTGCTCAACATGTTAACAAACTCCCCGACAATAAAACCTCTGAGAAGTCCCGTTCAAGTCCTCACGGGAGGAGCCCCGCCACCTGCGGCAGTGCTAAACCGAGCGGAAGAGTTAGGATTTGTGATTAAAGACCGATCAAAGGACGTGATTATAAGTGGTGGTGAGAATCTGAGCAGCGTGGAAGTTGAATCGGTGCTTTACACCAACCCGGCGGTGAACGAGGCGGCGGTGGTGGCGAGGCCGGACGAGTTCTGGGGAGAGACGCCGTGCGCGTTCGTGAGCTTGAGGGAAGGATTGGAGAAGAAGCCGACGGAGAAGGAGATAATGGAGTATTGCAGAAAGAGGATACCGCACTTTATGGCGCCGAAGACGGTGGTGTTCATGGAAGATCTTCCAAAGACTTCGACTGGTAAGATTCAGAAGTTTTTGCTGAGAAAAGAAGCCAGAGATATGGGGTCATTGAAACACAGCAGATTGTGA	3135	0.5365	MEDLKPNAANSSPLTPLGFLDRAATVYGDCTSIIYHDITFTWSQTRRRCLQLASSLSSIGIRRGHVVSVVAPNIPAMYELHFAVPFAGAVLNNINTRLDARTISIILRHGESKLVFVDCVSRALILEAISLLPPTTPRPILILITTASMEPTSSEGFLDTYEGLLKKGDPNFQWIRPESELDPVILNYTSGTTSSPKGVVHCHRGIFLVTVDSLIDWAIPKQPVYLWTLNMFHVNGWSFAWGMAAVRGTNVCVRKFDAATVFNLIERHGVTHMCAAPVVLNMLTNSSTRKTLRNPVHILTSGAPPPATVLQRSEALGFVVTHGYGVEVESMLYSNPAVNEAAVVAGPDEFWGETPCAFVSLRVGLEKKPTEKEIMEYCKARMPHFMAPKSVVFKEELPKTSTEIPRPILILIADDSVELTSSEGFYDTYEGLVEKGDPNFQWIRPKSELDPITLNYTSGTTSTGGAQHDNKLCKQETSEKSRSSPRRWSTATSVSVAPNGSRGGRIGAVQQPRGKRGSGGGEAGRVLGRDAVRVCALEGGIEEKADGEGDNGVLQREDATLHGAEDGGVQGGSSKDFDXFSGDQLYIARAVSCVVEASKYFFVFILDMEDIKPHTVNSYPLTPLGFLDRASTVYGGCTSIIYNNTSFTWSQTHRRCLQLASSLSSIGIRRGHVVSVVAPNIPAMYELHFAVPFAGVVLNNINTRLDARTISIILRHGESKLVFVDCVSRALVLDAISLLPPETQRPILVLITDDSVEPTSSEGFFDTYEGLVAKGDPNFQWIRPKSEWDPMLLNYTSGTTSSPKGVVHCHRGTFVVTVDSLIDWAMPKQPIYLWTLNMFHSNGWSFPWGIAAMGGANICLRKCDATTVFTLIERHGVTHMCAAPVVLNMLTNSPTIKPLRSPVQVLTGGAPPPAAVLNRAEELGFVIKDRSKDVIISGGENLSSVEVESVLYTNPAVNEAAVVARPDEFWGETPCAFVSLREGLEKKPTEKEIMEYCRKRIPHFMAPKTVVFMEDLPKTSTGKIQKFLLRKEARDMGSLKHSRL	1044

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele28g1388	1044	MobiDBLite	consensus disorder prediction	453	471	-	-
	Lele28g1388	1044	Pfam	AMP-binding enzyme C-terminal domain	327	402	IPR025110	-
	Lele28g1388	1044	Pfam	AMP-binding enzyme C-terminal domain	946	1023	IPR025110	-
	Lele28g1388	1044	Gene3D	-	607	931	IPR042099	-
	Lele28g1388	1044	SUPERFAMILY	Acetyl-CoA synthetase-like	11	402	-	-
	Lele28g1388	1044	SUPERFAMILY	Acetyl-CoA synthetase-like	613	1036	-	-
	Lele28g1388	1044	Gene3D	-	42	202	-	-
	Lele28g1388	1044	PANTHER	ACYL-ACTIVATING ENZYME	1	325	-	-
	Lele28g1388	1044	Gene3D	-	932	1037	IPR045851	-
	Lele28g1388	1044	MobiDBLite	consensus disorder prediction	484	499	-	-
	Lele28g1388	1044	Gene3D	-	323	398	IPR045851	-
	Lele28g1388	1044	Gene3D	-	39	322	-	-
	Lele28g1388	1044	MobiDBLite	consensus disorder prediction	453	525	-	-
	Lele28g1388	1044	Pfam	AMP-binding enzyme	632	924	IPR000873	-
	Lele28g1388	1044	Pfam	AMP-binding enzyme	21	327	IPR000873	-
	Lele28g1388	1044	FunFam	2,3-dihydroxybenzoate-AMP ligase	932	1037	-	-
	Lele28g1388	1044	ProSitePatterns	Putative AMP-binding domain signature.	186	197	IPR020845	-
	Lele28g1388	1044	ProSitePatterns	Putative AMP-binding domain signature.	793	804	IPR020845	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele28g1388	Lele-ChrLele28	10016053	10025354	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele28g1388	608	925	EF-hand Containing Proteins	AT1G21540	60.000	1.25e-135	419

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele28g1388	28	10016053	10025354	Lele28g1388	28	10016053	10025354	ECH
	Lele25g1384	25	9904519	9912651	Lele28g1388	28	10016053	10025354	hybridization
	Lele26g1403	26	9856690	9858336	Lele28g1388	28	10016053	10025354	hybridization