Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g1384 ATGGAGAGGGCAAAGTTAAAGACGAGGCAAGGTGTAAGAACAATCGGGCTGGCGGAGATGGACGTGGTGGATCCGGATTCGGGTAAAAGCGTTAAACGCGATGGGTCAACCCTCGGGGACATGGTTGTTCGGGGCGGATCCGTCATGTTGGGCTACCTGAAAGATCCAGATACCAACTCCAAGTGCTTCAAGAATGGGTGGTTCTGCCCCGGAGACGTTGGAGTGATTCATCCAGATGGGTACTTAGAGACTAAACATAGATCCAAAGACGTGATTATAAGTGGAGGTGAGAATCTGAGCAGCATGGAGGTGGAATCGGTGCTGTACAGCAACCCTGCGTTGAACGAGGCGGCGGTGGTGGCGAGGCCGGACGAGTTATGGGGAGAGACGCCATGCGCGTTCGTGAACCTGAGGAAGGGATTGGAGAAGAAGCCGACGGAGAAGGGGATAATGGAGTATTGCAGGGCGAGGATGCCGCACTTCATGGTGCCGAAGATGGTGGGGTTCAAGGAGGAACTTCCAAAGACTTCAACTGATTCTCTGATCGACTGGGCTGTTCCCAAACAACTGGTCTACCTCTGGACGCTGAATATATTCCACTCTAACGGTTGGAACTTCCCATGGGGAAACTCGGCCATGGGAGGAACCAATATCTGCCTCCGTAAATTCGAAGCCGAGACCGTGTTCACTCTGATCGAAAGCCACGGCGTTACACACTTATGCGCTGCACCAGTGGTGCTCAACATGTTAACAAACTCCCCAAGAATAAAACCTCTGAGAAGCCCCGTTCCAGTCCCCACGGGAGGATCGCCGCCACCTGCGGCAGTGCTTCACAGAGCGGAAGCGTTAGGATTTGTGATTTCTCTCAAGTCTGGCAATTTAGACGAGGCCCTTTGCCTAATCGAGTCGTCGCCTTCGAATTCCACCGCCTACGAACCAGACGATATACAGGCACTCTCAGTCCTCCTTCATGCCTGCATCTCCAGAAAGTCCTTCTCGCATGGCCAAAAGCTCTACTTCCACTTCCTTCGATCACCGGACAGATTCAAGCAAGACCTTTTGCGCAACCCCATATTGAAGACCAAGCGCATCACGCTCTTCTCTGTTTGTGGTCGGATCGACGAGGCTCGCCGGATTTTCAACTTCCGTCTCGAAGATGAAAAGATATCAGAGTCGGTTTGGGTGGCTATGGCTATTGGGTATTCCAGAAATGGGTTTTCTAACGAAGCTTTGATGTTATACTGTGAAATGTTATCAACCCGATATGTCAGACCCAACAATTTCGCGTTTTCCATGGCTCTTAAGGCCTGTGCTGATACGTCTGATTCATTGGTGGGTAGAGCAGTTCATGCTCAAATCATTAAGAGTGATGAGGAATCAGATCAAGTGGTGAATAATGCTCTTTTGAGGTTCTATGCTGAGTGTGGATTCTTGGGTGAGGCCCTAAAGGTGTTTGAGGAAATGCCTCAACGAAATGTGATTTCTTGGAACACTGTAATCGCTGGTGTTGCAGCTCAAGACAAAGTGTCTGAGACATTTAGTGCATTTAGAGTTATGCAGGGAGAGAATCTCAGGTTCAGCTGGGTTACTCTTACGACGATCTTGTCTATGTGTGCTCGGGTTAGTTCACTTCATAGCGGCAAGGAGATACATGTACAGATTGTGAAGTCTCCGAAGAAAGGTGATCTTCCATTACTCAACTCACTGATGGACATGTATGCCAAATGTGGAGGCCTTGATTACTGTTGTAGCTATTCAGGACTTGCCGATAAAGGGCAAGAATTGTTTAATATGATGGAGATTTATGAGGTGAAACCATCTATAGAGCACTATGCTTGTTTAGTAGACATATTAGGCAGGGCGGGGAGAATCCACGAAGCATTAGCTTTGGTGCAAAACATGCGGATGAATCGAAGTGGCAGCATATGGGGATCCTTGCTTAACTCATGCCGTCTTTACGGAAATGTTCCTCTTGCAGAGGTTGTTGCCGAGAAATTGTTCGAGATTGAACCTTACAATCCTGGCAACTATGTGATGCTCTCGAACATCTATGCAAAAGCAGAAATGTGGGATGGTGTGAAGAGAGTTAGAGAAATGATGACCTTGAGAGGAATAAAGAAAGAGGCTGGATGTAGCTGGACACAAATAAAGCATAGAATCCATACCTTCATCCCCGGGGGGAGCTCGGTGTTTCGTTCTTCAGCTGAGTATTTGAAAACCTGGAACGAGTTGTGTGATGCTATAAAAGAAGCAGGCTATATCCCTAAACACCGGTGTTGTTCTTCATGA 2289 0.4819 MERAKLKTRQGVRTIGLAEMDVVDPDSGKSVKRDGSTLGDMVVRGGSVMLGYLKDPDTNSKCFKNGWFCPGDVGVIHPDGYLETKHRSKDVIISGGENLSSMEVESVLYSNPALNEAAVVARPDELWGETPCAFVNLRKGLEKKPTEKGIMEYCRARMPHFMVPKMVGFKEELPKTSTDSLIDWAVPKQLVYLWTLNIFHSNGWNFPWGNSAMGGTNICLRKFEAETVFTLIESHGVTHLCAAPVVLNMLTNSPRIKPLRSPVPVPTGGSPPPAAVLHRAEALGFVISLKSGNLDEALCLIESSPSNSTAYEPDDIQALSVLLHACISRKSFSHGQKLYFHFLRSPDRFKQDLLRNPILKTKRITLFSVCGRIDEARRIFNFRLEDEKISESVWVAMAIGYSRNGFSNEALMLYCEMLSTRYVRPNNFAFSMALKACADTSDSLVGRAVHAQIIKSDEESDQVVNNALLRFYAECGFLGEALKVFEEMPQRNVISWNTVIAGVAAQDKVSETFSAFRVMQGENLRFSWVTLTTILSMCARVSSLHSGKEIHVQIVKSPKKGDLPLLNSLMDMYAKCGGLDYCCSYSGLADKGQELFNMMEIYEVKPSIEHYACLVDILGRAGRIHEALALVQNMRMNRSGSIWGSLLNSCRLYGNVPLAEVVAEKLFEIEPYNPGNYVMLSNIYAKAEMWDGVKRVREMMTLRGIKKEAGCSWTQIKHRIHTFIPGGSSVFRSSAEYLKTWNELCDAIKEAGYIPKHRCCSS 762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g1384 762 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 461 495 IPR002885 -
Lele25g1384 762 Gene3D - 93 174 IPR045851 -
Lele25g1384 762 Gene3D Tetratricopeptide repeat domain 288 445 IPR011990 GO:0005515
Lele25g1384 762 TIGRFAM PPR: pentatricopeptide repeat domain 466 492 IPR002885 -
Lele25g1384 762 TIGRFAM PPR: pentatricopeptide repeat domain 611 636 IPR002885 -
Lele25g1384 762 SUPERFAMILY Acetyl-CoA synthetase-like 18 181 - -
Lele25g1384 762 FunFam Pentatricopeptide repeat-containing protein 392 542 - -
Lele25g1384 762 SUPERFAMILY Acetyl-CoA synthetase-like 185 283 - -
Lele25g1384 762 Gene3D Tetratricopeptide repeat domain 446 552 IPR011990 GO:0005515
Lele25g1384 762 Pfam E motif 653 715 IPR046848 -
Lele25g1384 762 Gene3D - 178 287 - -
Lele25g1384 762 Pfam PPR repeat 393 418 IPR002885 -
Lele25g1384 762 Pfam PPR repeat 611 637 IPR002885 -
Lele25g1384 762 Pfam PPR repeat 466 493 IPR002885 -
Lele25g1384 762 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 582 759 - -
Lele25g1384 762 Gene3D Tetratricopeptide repeat domain 560 725 IPR011990 GO:0005515
Lele25g1384 762 Pfam AMP-binding enzyme C-terminal domain 103 178 IPR025110 -
Lele25g1384 762 FunFam pentatricopeptide repeat-containing protein At2g33680 579 734 - -
Lele25g1384 762 Gene3D - 4 92 IPR042099 -
Lele25g1384 762 Pfam AMP-binding enzyme 186 285 IPR000873 -
Lele25g1384 762 Pfam AMP-binding enzyme 15 94 IPR000873 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g1384 Lele-ChrLele25 9904519 9912651 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele25g1384 177 285 EF-hand Containing Proteins AT1G21540 57.798 7.44e-39 150
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g1384 25 9904519 9912651 Lele25g1384 25 9904519 9912651 ECH
Lele25g1384 25 9904519 9912651 Lele27g0706 27 15079493 15082945 hybridization
Lele25g1384 25 9904519 9912651 Lele28g1388 28 10016053 10025354 hybridization