Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g1277 ATGGACGACGAAACTCGCCGGATCTTCGACAAGTTCGACATTAACGGAGACGGAAAGATCTCCAGCTCTGAGCTAAAGAAGATGCTGCTCACACTTGACTCCAAAACCACGTCGAAGGAGATCAAGCGCATCATGGCCGAGCTTGACAAGAACGGCGACGGCTACATTGATCTCAAAGAGTTCGCCGACTTCCACCAATCTGGCGGAGAAAAGCTCGCCGACTCAAGAGAGCTCCGCGACGCCTTTGATCTGTACGACTTGGACAAGAACGGACTGATCTCGGTCACTGAGTTGCATGCGGTGCTGCGAAAGTTAGGGGAGAAGAGATCCTTGAGCGACTGCCGGAAAATTATCAGCTCCGTCGACACCGACGGCGATGGTAACATCAATTTCGAGGAGTTCAAGAGGATGATGACTCGCGCCTAG 426 0.5258 MDDETRRIFDKFDINGDGKISSSELKKMLLTLDSKTTSKEIKRIMAELDKNGDGYIDLKEFADFHQSGGEKLADSRELRDAFDLYDLDKNGLISVTELHAVLRKLGEKRSLSDCRKIISSVDTDGDGNINFEEFKRMMTRA 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g1277 141 SUPERFAMILY EF-hand 4 140 IPR011992 -
Lele28g1277 141 ProSiteProfiles EF-hand calcium-binding domain profile. 36 71 IPR002048 GO:0005509
Lele28g1277 141 FunFam Calmodulin 1 1 141 - -
Lele28g1277 141 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 77 139 - -
Lele28g1277 141 ProSitePatterns EF-hand calcium-binding domain. 49 61 IPR018247 -
Lele28g1277 141 ProSiteProfiles EF-hand calcium-binding domain profile. 1 35 IPR002048 GO:0005509
Lele28g1277 141 CDD EFh 77 139 IPR002048 GO:0005509
Lele28g1277 141 Pfam EF-hand domain pair 77 138 IPR002048 GO:0005509
Lele28g1277 141 Pfam EF-hand domain pair 4 64 IPR002048 GO:0005509
Lele28g1277 141 ProSitePatterns EF-hand calcium-binding domain. 86 98 IPR018247 -
Lele28g1277 141 ProSitePatterns EF-hand calcium-binding domain. 13 25 IPR018247 -
Lele28g1277 141 Gene3D - 68 141 - -
Lele28g1277 141 Gene3D - 1 67 - -
Lele28g1277 141 ProSiteProfiles EF-hand calcium-binding domain profile. 73 108 IPR002048 GO:0005509
Lele28g1277 141 CDD EFh 4 66 IPR002048 GO:0005509
Lele28g1277 141 ProSiteProfiles EF-hand calcium-binding domain profile. 109 141 IPR002048 GO:0005509
Lele28g1277 141 SMART efh_1 40 68 IPR002048 GO:0005509
Lele28g1277 141 SMART efh_1 113 141 IPR002048 GO:0005509
Lele28g1277 141 SMART efh_1 4 32 IPR002048 GO:0005509
Lele28g1277 141 SMART efh_1 77 105 IPR002048 GO:0005509
Lele28g1277 141 ProSitePatterns EF-hand calcium-binding domain. 122 134 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g1277 Lele-ChrLele28 8534908 8535333 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g1277 3 139 EF-hand Containing Proteins AT1G18210 50.365 1.16e-45 144
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g1273 25 8585625 8586050 Lele28g1277 28 8534908 8535333 CCT
Lele26g1278 26 8432210 8433907 Lele28g1277 28 8534908 8535333 CCT
Lele27g0818 27 16226922 16228502 Lele28g1277 28 8534908 8535333 CCT
Lele28g1270 28 8478871 8480400 Lele28g1277 28 8534908 8535333 CCT
Lele25g1273 25 8585625 8586050 Lele28g1277 28 8534908 8535333 hybridization