Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g0782 ATGGCTTCTCCTCCTCCGTCGTATCAGACAGATCTTCCTCTGCCCCCTGACTCTCAAGCTGGCGACAAGCTTCCGGATCATGAAGATAGTTCGACTCCGGTTCCAATCCATATTGTCACCAGTGCATCTCAACTTCCAGTTGAATTCCTCGAACCCTCACCTCAAACGAAACTCGTCATTGGTTTCGACTGTGAGGGTGTCGACTTGTGTCGTTATGGGGCTCTCTGTATAATGCAGCTTGCATTTCCGGATGCTATATACCTGGTTGATGCAATCGAAGGTGGAGAGACGCTTATGAGAGCCTGCAAGCCTGCACTTGAGTCTAGTTACATAAAAAAAGTGATTCATGATTGTAAACGAGACAGTGAGGCATTGTATTTTCAATTTGGCATCAAGTTGAATAACGTGATGGATACCCAGATTGCTTATTCACTGATAGAGGAGCAAGAAGGACGGAAGAGATTGCCAGATGACTACATTTCATTTGTCGGCCTCCTTGCAGATCCATATTATTGTGGTATATCATATGATGAGAAAGAAGAAGTTCGCATCCTCCTTCGGCAGGACCCCAAGTATTGGACATACAGACCATTATCTGAACAAATGGTCCGTGCAGCTGCTGATGACGTTCGCTTTCTTCTTTACATTTATCACCGGATGATGGAGAAATTAAGTGAGCGGTCTCTATGGTATCTTGCAGTTCGTGGTGCCCTCTATTGCCGATGCTTTTGTGTCAATGACGATTATGCGGACTGGCCATCTCTGCCTCCTATTCCAGATGTGTTGACAGTTGACGGAGATGCTCCCGAGGAAGAAATCCTTTCAGTTCTTGATGTCCCCCAAGGAAAGATGGGACGCGTTATTGGGAGAAAAGGGGCGTCAATTTTGTCAATTAAGGAATCCTGCGAGGCGCAAATTCTCATTGGAGGTGCGAAGGGCCCACCTGACAAGGTTTTTATCATGGGACCAGTGAAGCAGGTGAGGAAAGCAGAGGCCATGTTAAGGGGAAGAATGCTGGATGTGTACTGA 1029 0.4655 MASPPPSYQTDLPLPPDSQAGDKLPDHEDSSTPVPIHIVTSASQLPVEFLEPSPQTKLVIGFDCEGVDLCRYGALCIMQLAFPDAIYLVDAIEGGETLMRACKPALESSYIKKVIHDCKRDSEALYFQFGIKLNNVMDTQIAYSLIEEQEGRKRLPDDYISFVGLLADPYYCGISYDEKEEVRILLRQDPKYWTYRPLSEQMVRAAADDVRFLLYIYHRMMEKLSERSLWYLAVRGALYCRCFCVNDDYADWPSLPPIPDVLTVDGDAPEEEILSVLDVPQGKMGRVIGRKGASILSIKESCEAQILIGGAKGPPDKVFIMGPVKQVRKAEAMLRGRMLDVY 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g0782 342 SUPERFAMILY Ribonuclease H-like 5 251 IPR012337 -
Lele28g0782 342 Pfam KH domain 277 335 IPR004088 GO:0003723
Lele28g0782 342 MobiDBLite consensus disorder prediction 1 33 - -
Lele28g0782 342 Gene3D - 2 239 IPR036397 GO:0003676
Lele28g0782 342 SMART kh_6 271 339 IPR004087 GO:0003676
Lele28g0782 342 Gene3D K Homology domain, type 1 263 338 IPR036612 GO:0003723
Lele28g0782 342 CDD KH-I 277 334 - -
Lele28g0782 342 Pfam 3'-5' exonuclease 51 224 IPR002562 GO:0003676|GO:0006139|GO:0008408
Lele28g0782 342 PANTHER EGALITARIAN, ISOFORM B 19 339 - -
Lele28g0782 342 CDD Egl_like_exo 49 244 - -
Lele28g0782 342 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 266 340 IPR036612 GO:0003723
Lele28g0782 342 SMART 35exoneu6 36 225 IPR002562 GO:0003676|GO:0006139|GO:0008408
Lele28g0782 342 ProSiteProfiles Type-1 KH domain profile. 272 334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g0782 Lele-ChrLele28 4977797 4981782 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0782 25 4982867 4986939 Lele28g0782 28 4977797 4981782 hybridization
Lele26g0795 26 5044943 5049037 Lele28g0782 28 4977797 4981782 hybridization