Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g0590 ATGATCAACATTCTTGCCAAATCGAGGGAGTCTGACTCCGTTTGGATTTTGCTTCTCGAACGGATTGATCGCCACGAGGAAGCCATCTTCCTTTCCGTGGATAACTTTTCCATAATGATCAGACGGTATGCAGTTGCAGAATTGAGATTGTTTGAGATATTGTTGGATTCACTTTGTAAAGAAGGGTCTGTCAGAGCAGCTTCAGAGTATTTCCTTCAGAGAAAGAAGATGCACCCATCTTGGGTCCCATCAGTTCGGATTTATAATATTATGCTAAATGGATGGTTTCCATCAAGGAAACTCAAACATGCTGAGAGATTTTGGGTAGAGATGAAGAAGGAGAAGGTAAGACCAAGTGTGGTGACTTATGGCACCCTTGTGGAAGGATATTGCCGGATGCGTCATGTTGAAAAGGCAATTGAATTGGTTAATGATATGACCAAACAAGGAATTAAACCGAATGCAATTGTGTATAATCCAATAATCGATGCATTAGCAGAGTCTGGGAGATTCAAAGAGGCTTTGGGGATGCTGGAGCGTTTTCTTGTCCCAGAAACAGGCCCAACTAACTCAACTTACAATTCTTTGGTGAAGGGATATTGTAAAGTGGGAGATCTTCTTGGTGCCAGTGAGATTCTTAAGATGATGATAAGTAGGGGTTTCATCCCCAGTCCCACCACCTATAACTACTTTAGGTATTTTTCAAGATGTAGGAAAGTTGATGAGGGTATGAACCTTTATACCAAGATGATTGAATCTGGTTATACCCCTGATCGGCTTACTTACCATCTTTTACTGAAGATGCTATGTGAAGAGGGGAAATCGAACTTGGCAGTTCAAGTTAGCAAGGAAATGAGGCGGGAGGGATATGACATGGACCTTGCCACAAGTACTATGTTGGTTCATTTGCTTTGCAAAATGCATAGGTTGGAAGAGGCTTTTGCAGAATTTGAGGACATGATACGGAGGGGTATAGTTCCTCAGTATCTCACATTTCAGAGAATGAATAGTGAATTAAAGAAGCGAGGGATGATTGAAATGGCACGAAAACTATGCAGCTTGATGACCCCAGAGAACTGGCCAAATGCAGAAGCTCATCAGAAAATGCTGTTTCCAGCGCTGAGGAGCGCGGCTAGGCCTGAGACTGGAGCTGGAGCTGGAGTTGGAGTTGGAGTTGGGAGAGCTCAACATGATCCAGACGGATATGATTGCAGGCCAAGTTATGAGGCTCTCTATTTTGAGGAAAGTCACTGGACCAATGGATTTCCAAGGTCTACTCCGTCGAGATATGATGGGAAATAG 1302 0.4324 MINILAKSRESDSVWILLLERIDRHEEAIFLSVDNFSIMIRRYAVAELRLFEILLDSLCKEGSVRAASEYFLQRKKMHPSWVPSVRIYNIMLNGWFPSRKLKHAERFWVEMKKEKVRPSVVTYGTLVEGYCRMRHVEKAIELVNDMTKQGIKPNAIVYNPIIDALAESGRFKEALGMLERFLVPETGPTNSTYNSLVKGYCKVGDLLGASEILKMMISRGFIPSPTTYNYFRYFSRCRKVDEGMNLYTKMIESGYTPDRLTYHLLLKMLCEEGKSNLAVQVSKEMRREGYDMDLATSTMLVHLLCKMHRLEEAFAEFEDMIRRGIVPQYLTFQRMNSELKKRGMIEMARKLCSLMTPENWPNAEAHQKMLFPALRSAARPETGAGAGVGVGVGRAQHDPDGYDCRPSYEALYFEESHWTNGFPRSTPSRYDGK 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g0590 433 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 189 223 IPR002885 -
Lele28g0590 433 Gene3D Tetratricopeptide repeat domain 1 148 IPR011990 GO:0005515
Lele28g0590 433 Gene3D Tetratricopeptide repeat domain 232 396 IPR011990 GO:0005515
Lele28g0590 433 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 293 327 IPR002885 -
Lele28g0590 433 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 154 188 IPR002885 -
Lele28g0590 433 Pfam PPR repeat family 118 166 IPR002885 -
Lele28g0590 433 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 119 153 IPR002885 -
Lele28g0590 433 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 84 118 IPR002885 -
Lele28g0590 433 PANTHER ATPASE EXPRESSION PROTEIN 3 37 274 - -
Lele28g0590 433 TIGRFAM PPR: pentatricopeptide repeat domain 298 327 IPR002885 -
Lele28g0590 433 TIGRFAM PPR: pentatricopeptide repeat domain 87 119 IPR002885 -
Lele28g0590 433 TIGRFAM PPR: pentatricopeptide repeat domain 192 224 IPR002885 -
Lele28g0590 433 TIGRFAM PPR: pentatricopeptide repeat domain 121 155 IPR002885 -
Lele28g0590 433 TIGRFAM PPR: pentatricopeptide repeat domain 261 293 IPR002885 -
Lele28g0590 433 TIGRFAM PPR: pentatricopeptide repeat domain 156 180 IPR002885 -
Lele28g0590 433 Pfam PPR repeat 234 254 IPR002885 -
Lele28g0590 433 Pfam PPR repeat 87 115 IPR002885 -
Lele28g0590 433 Pfam PPR repeat 191 221 IPR002885 -
Lele28g0590 433 Pfam PPR repeat 261 289 IPR002885 -
Lele28g0590 433 Pfam PPR repeat 297 325 IPR002885 -
Lele28g0590 433 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 258 292 IPR002885 -
Lele28g0590 433 Gene3D Tetratricopeptide repeat domain 150 231 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g0590 Lele-ChrLele28 3773134 3775739 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g0590 16 382 Glycosyltransferase AT1G05670 26.933 3.86e-39 148
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0587 25 3743535 3745686 Lele28g0590 28 3773134 3775739 hybridization
Lele26g0603 26 3846824 3849998 Lele28g0590 28 3773134 3775739 hybridization