Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele26g0603 ATGAGTCTGCTGCAAGCGGTATTCGATCATTTCGATTCTTCCCCAAAGTTACTATACTCGCTGTTTCTTTGGGCTCAGAAGCGACCAGGTTTCAGGCCCCGCGTGACGCTTTTCAACTCTATGATCAACGTTCTTGCCAAATCGAGGGAGTTTGACTCCGTTTGGATTTTGCTTCTTGAACGGATTGATCGCCACGAGGAATCCATCTTCCTTTCCGTGGATAACTTTGCCATAATGATCAGACGGTATGCAGTTGCAGGTATGTCACAACCTGCAATTCGAACATTTGAGTATGCTAGAAATTTAAAGCCAATTATGGATTCGGATTCAGAATTGAGATTGTTTGAGATATTGTTGGATTCACTTTGTAAAGAAGGGTCTGTCAGAGCAGCTTCAGAGTATTTCCTTCAGAGAAAGAAGATGGACCCATCTTGGGTCCCATTAGTTCGGATTTATAATATTATGCTAAATGGATGGTTTCGATCAAGGAAACTCAAACATGCTGAGAGATTTTGGGTAGAGATGAAGAAGGAGAATGTAAGACCAAGTGTGGTGACTTATGGCACCCTTGTGGAAGAATATTGCCGGACGCGTCATGTTAAAAAGGCAATTGAATTGGTTAATGATATGACCAAACAAGGAATTAAACCGAATGGAATTGTGTATAATCCAATAATCGATGCATTAGCAGAGTCTGGGAGATTCAAAGAGGCTTTGGGGATGCTGGAGCGTTTTCTTGTCCTAGAAGCAGGCCCAACTAACTCAACTTACAATTCTCTGGTGAAGGGATACTGTAAAGCAGGAGATCCTCTTGGTGCCAGTGATATTCTTAAGATGATGATAAGTAGGGGTTTCATCCCCAGTCCCACCACCTATAACTACTTCTTTAGGTACTTTTCTAGATGTAGGAAAGTTGATGAGGGTATGAAACTTTATACCAAGATGATTGAATCTGGTTATACCCCTGATCGGCTTACTTACCATCTTTTACTGAAGATGCTATGTGAAGAGGGGAAATTGAACTTGGCAGTTCAAGTTAGCAAGGAAATGAGGCAGGAGGGATATGACATGGACCTTGCCACAACTACTATGTTGTTTCATTTGCTTTGCAAAATGCATAGGTTGGAAGAGGCTTTTACAGAATTTGAGGACATGATACGGAGGGGTATAGTTCCTCAGTATCTCACATTTCAGAGAATGAATAGTGAATTAAAGAAGACCCCAGAGAACTGGCCAAATACAGAAGCTCATCAGAAAATGCTGTTTCCAGCGCTGAGGAGCGCTGCTAGGCCTGAGACTGGAGCTGGAGTTGGAGTTGGGAGTGCTCAACATTATCCAAACGGATGTGATTGCAGGCCAAGTTATGAGGCTCTCTATTTTGAGGAAAGTCACTGGACCAATGGATTTCCAAGGTCTACTCAGTCGAGAGATGGTGGATAG 1440 0.4264 MSLLQAVFDHFDSSPKLLYSLFLWAQKRPGFRPRVTLFNSMINVLAKSREFDSVWILLLERIDRHEESIFLSVDNFAIMIRRYAVAGMSQPAIRTFEYARNLKPIMDSDSELRLFEILLDSLCKEGSVRAASEYFLQRKKMDPSWVPLVRIYNIMLNGWFRSRKLKHAERFWVEMKKENVRPSVVTYGTLVEEYCRTRHVKKAIELVNDMTKQGIKPNGIVYNPIIDALAESGRFKEALGMLERFLVLEAGPTNSTYNSLVKGYCKAGDPLGASDILKMMISRGFIPSPTTYNYFFRYFSRCRKVDEGMKLYTKMIESGYTPDRLTYHLLLKMLCEEGKLNLAVQVSKEMRQEGYDMDLATTTMLFHLLCKMHRLEEAFTEFEDMIRRGIVPQYLTFQRMNSELKKTPENWPNTEAHQKMLFPALRSAARPETGAGVGVGSAQHYPNGCDCRPSYEALYFEESHWTNGFPRSTQSRDGG 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele26g0603 479 Pfam PPR repeat family 253 298 IPR002885 -
Lele26g0603 479 Pfam PPR repeat family 149 196 IPR002885 -
Lele26g0603 479 Pfam PPR repeat 362 390 IPR002885 -
Lele26g0603 479 Pfam PPR repeat 326 354 IPR002885 -
Lele26g0603 479 Pfam PPR repeat 38 58 IPR002885 -
Lele26g0603 479 Pfam PPR repeat 221 244 IPR002885 -
Lele26g0603 479 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 148 182 IPR002885 -
Lele26g0603 479 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 253 287 IPR002885 -
Lele26g0603 479 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 183 217 IPR002885 -
Lele26g0603 479 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 323 357 IPR002885 -
Lele26g0603 479 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 358 392 IPR002885 -
Lele26g0603 479 Gene3D Tetratricopeptide repeat domain 12 142 IPR011990 GO:0005515
Lele26g0603 479 Gene3D Tetratricopeptide repeat domain 265 429 IPR011990 GO:0005515
Lele26g0603 479 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 218 252 IPR002885 -
Lele26g0603 479 SUPERFAMILY HCP-like 124 354 - -
Lele26g0603 479 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 288 322 IPR002885 -
Lele26g0603 479 TIGRFAM PPR: pentatricopeptide repeat domain 256 288 IPR002885 -
Lele26g0603 479 TIGRFAM PPR: pentatricopeptide repeat domain 291 323 IPR002885 -
Lele26g0603 479 TIGRFAM PPR: pentatricopeptide repeat domain 151 183 IPR002885 -
Lele26g0603 479 TIGRFAM PPR: pentatricopeptide repeat domain 185 218 IPR002885 -
Lele26g0603 479 TIGRFAM PPR: pentatricopeptide repeat domain 220 244 IPR002885 -
Lele26g0603 479 TIGRFAM PPR: pentatricopeptide repeat domain 361 392 IPR002885 -
Lele26g0603 479 TIGRFAM PPR: pentatricopeptide repeat domain 326 358 IPR002885 -
Lele26g0603 479 PANTHER ATPASE EXPRESSION PROTEIN 3 8 350 - -
Lele26g0603 479 Gene3D Tetratricopeptide repeat domain 147 251 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele26g0603 Lele-ChrLele26 3846824 3849998 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele26g0603 30 400 Miscellaneous Gene Families AT4G11690 26.260 1.59e-38 145
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele26g0603 26 3846824 3849998 Lele27g1493 27 20954396 20956534 hybridization
Lele26g0603 26 3846824 3849998 Lele28g0590 28 3773134 3775739 hybridization