Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g0587 ATGATTTTCCATAATTCTCGTCATGTAATCTTCTTAGTTCGTCCTCTGTTGCTAAGGCCAAAGCTTTGTCCATTCCTTAGAGCTCGAAATCAACGCTTCTTTTCCTCTTCGGCACAATCATCGCTATATATGCCGGTTAGCTCTGTCATCGATTGGCCATTACTACCAATCCTAGAACGCAACCCAAACGCCAACCCGAAATTGAACGCAGTCTCTAACTTCTCGCTGGATGACTTCTCCACCACTGCCAATCTCTTTGTCGACCCTTCCATTTCTCAGGGTCCAGCTCTAGATAATGCACTCGATGGGGCCGGAATTGAACCGGATCCGACTCTGCTGCAAGCGTTATTCGATCATTTCGATTCTTCCCCAAAGTTACTACACTCGCTGTTTCTTTGGGCTCAGAAGCGACCAGGGTTCAGGCCTAGTGTGACGCTTTTCAACTCTATGATCAACGTTCTTGCCAAATCGAGGGAGTTTGACTCTGCTTGGATTTTGCTTCTTGAACGGATTGATCGGCACGAGGAAGCCATCTTCCTTTCCGTGGATACTTTTGCTATAATGATCAGACGGTATGCAGTTGCAGGTATGTCACAACCTGCAATTCGAACATTTGAGTATGCTAGAGATTTAAAGCCAATTATGGATTCGGATTCAGAAATGAGATTGTTTGAAATATTGTTGGATTCACTTTGTAAAGAAGGGTCTGTCAGAGCAGCTTCAGAGTATTTCCTTCAGAAAAAGATGGACCCATCGTGGGTCCCATCAGTTCGGATTTATAATATTATGCTAAATGGATGGTTTCGATCTAGGAAACTCAAACATGCTGAGAGATTTTGGGTAGAGATGAAGAAGGAGAATGTAAGACCAAGTGTGGTGACTTATGGCACCCTTGTGGAAGGATATTGCAGGATGCGTCGTGTTGAAAAGGCAATTGAATTGGTTAATGATATGACCAAACAAGGAATTGAACCGAATGCAATTGTGTATAATCCAATAATCGATGCATTAGCAGAGGCTGGGAGATTCAAAGAGGCTTTGGGGATGTTGGAGCGTTTTCATGTCTTAGAAACAGGCCCAACTAACTCAACTTACAATTCTTTGGTGAAGGGATATTGTAAGGCAGGAGATCTTCTTGGTGCCAGTGAGATTCTTAAGATGATGATAAGTAGGGGTTTCATCCCCAGTCCCACCACCTATAACTACTTCTTTAGGTACTTTTCAAGATGTAGGAAAGTTGATGAGGGTATGAACCTTTATACCAAGATGATTGAATCTGGTTATACCCCTGATCGGCTTACTTACCATCTTTTACTGAAGATGCTATGTGAAGAGGGGAAATTGAACTTGGCAGTTCAAGTTAGCAAGGAAATGAGGCATGCGGGATATGACATGGACCTTGCCACGAGTACTATGTTGGTTCATTTGCTTTGCAAAATGCATAGGTTGGAAGAGGCTTTTGCAGAATTTGAGGACATGATACGGAGGGGTATAGTTCCTCAGTATCTCACATTTCAGAGAATGAATAGTGAATTAAAGAAGCGAGGGATGATTGAAATGGCACGAAAACTATGCAGCTTGATGTCTTCTGTTCCTCATTCTACTAAGTTGCCAAATACATATGTTGAAGACATAGATGAAGCTCATGCCCGGAGACAATCTATAATGCAGAAGGCCAAAGCATTTTCTGATATGCTTAAAAACATCAAGGACCCCAGAGAACTTACCAAATACAGAAGCTTATCAGAAAATGCTGTTTCCAGCGCTGAGTGTTTGATGGATAATATTAAGACAAGGATAAAGAAGCCATGA 1812 0.4222 MIFHNSRHVIFLVRPLLLRPKLCPFLRARNQRFFSSSAQSSLYMPVSSVIDWPLLPILERNPNANPKLNAVSNFSLDDFSTTANLFVDPSISQGPALDNALDGAGIEPDPTLLQALFDHFDSSPKLLHSLFLWAQKRPGFRPSVTLFNSMINVLAKSREFDSAWILLLERIDRHEEAIFLSVDTFAIMIRRYAVAGMSQPAIRTFEYARDLKPIMDSDSEMRLFEILLDSLCKEGSVRAASEYFLQKKMDPSWVPSVRIYNIMLNGWFRSRKLKHAERFWVEMKKENVRPSVVTYGTLVEGYCRMRRVEKAIELVNDMTKQGIEPNAIVYNPIIDALAEAGRFKEALGMLERFHVLETGPTNSTYNSLVKGYCKAGDLLGASEILKMMISRGFIPSPTTYNYFFRYFSRCRKVDEGMNLYTKMIESGYTPDRLTYHLLLKMLCEEGKLNLAVQVSKEMRHAGYDMDLATSTMLVHLLCKMHRLEEAFAEFEDMIRRGIVPQYLTFQRMNSELKKRGMIEMARKLCSLMSSVPHSTKLPNTYVEDIDEAHARRQSIMQKAKAFSDMLKNIKDPRELTKYRSLSENAVSSAECLMDNIKTRIKKP 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g0587 603 Gene3D Tetratricopeptide repeat domain 368 582 IPR011990 GO:0005515
Lele25g0587 603 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 431 465 IPR002885 -
Lele25g0587 603 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 256 290 IPR002885 -
Lele25g0587 603 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 396 430 IPR002885 -
Lele25g0587 603 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 326 360 IPR002885 -
Lele25g0587 603 Pfam PPR repeat 322 351 IPR002885 -
Lele25g0587 603 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 291 325 IPR002885 -
Lele25g0587 603 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 466 500 IPR002885 -
Lele25g0587 603 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 361 395 IPR002885 -
Lele25g0587 603 Pfam PPR repeat family 361 405 IPR002885 -
Lele25g0587 603 Pfam PPR repeat family 255 304 IPR002885 -
Lele25g0587 603 TIGRFAM PPR: pentatricopeptide repeat domain 328 354 IPR002885 -
Lele25g0587 603 TIGRFAM PPR: pentatricopeptide repeat domain 434 466 IPR002885 -
Lele25g0587 603 TIGRFAM PPR: pentatricopeptide repeat domain 471 500 IPR002885 -
Lele25g0587 603 TIGRFAM PPR: pentatricopeptide repeat domain 364 396 IPR002885 -
Lele25g0587 603 TIGRFAM PPR: pentatricopeptide repeat domain 399 431 IPR002885 -
Lele25g0587 603 TIGRFAM PPR: pentatricopeptide repeat domain 259 291 IPR002885 -
Lele25g0587 603 TIGRFAM PPR: pentatricopeptide repeat domain 293 327 IPR002885 -
Lele25g0587 603 Gene3D Tetratricopeptide repeat domain 111 248 IPR011990 GO:0005515
Lele25g0587 603 Gene3D Tetratricopeptide repeat domain 280 357 IPR011990 GO:0005515
Lele25g0587 603 PANTHER MITOCHONDRIAL GROUP I INTRON SPLICING FACTOR CCM1 222 565 - -
Lele25g0587 603 SUPERFAMILY HCP-like 255 463 - -
Lele25g0587 603 Pfam PPR repeat 434 462 IPR002885 -
Lele25g0587 603 Pfam PPR repeat 147 167 IPR002885 -
Lele25g0587 603 Pfam PPR repeat 470 498 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g0587 Lele-ChrLele25 3743535 3745686 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele25g0587 270 576 Glycosyltransferase AT1G05670 24.127 6.19e-12 66.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0587 25 3743535 3745686 Lele27g1493 27 20954396 20956534 hybridization
Lele25g0587 25 3743535 3745686 Lele28g0590 28 3773134 3775739 hybridization