Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g0553 ATGCTCGAAATTTACAATACTCTCACTCCGCCTGTCTCTAACTCAAATCCGCTTTCTTCCTTTCTTATCACCTCTTCTTCTTCTTCCTCTTCTGCTCCAGCTCGGTGTTGCTTGAAGAGCAACGCTAATCCGCGTGAAAAGAACCTTAAGTGCCTTACTTCCCGCATCGTCCAACTCACCCACCGGAGGCAGCTTCACCAGATTTTTCAAGAGATTGAAATTGCCAGGAAACGTTATGGGAGGCTGAACACAATTTTCATGAACGCGGTCATGGAGGCCTGTGTTCATTGCGGTAATATTGATTCAGCTCTTAGGATATTTGATGAGATGAATAAACCGGGGAGCTTTGGAGTGGATACTGTCACTTATGCCACGCTTTTGAAGGGATTAGGCGAGTCGCGGAAAGTTGATGAAGCCTTTCAGTTGCTTGAATCCGTGGAAAAAGGTACCGTACCTGGAAATCCAAAGCTGTCAGCATCATTGATCTTTGGTCTGCTAAATGCCCTAATCGAAGCAGGCGAGTCTGAAGGAGACTTACGTCGTGCCAATGGCCTCCTTGCTCGTTATGGTTATGTACTTCATGAAGGTGGCAGTTTCTCAGTCTCAGTATACAACTTACTCAGAAAGCCTGACAGGTTCACCTACAACACTCTCATATTAGCATGTGTCAAGAGTCAAGGCATGGATACTGCTGTGAAATTTTTGGAAAACATGAAGGATGAAGCACAGAAATCTACCCACAATGATGTTTTGCCAGATATTGTCACATATACGACACTGCTCAAGGCCAAAGATCTCTCGTCAGTCCTGAAAATAGTGCTGGAAATGAAATCATGTCAGGAATTTTATATTGATCGAACAGCTTACACTGCAACAGTTGATGCTTTATTAAACTGTGGCTCAATATGCTGTTATTTTATTCTGATTCTTCCTGCTTGCTGGTTGAAATCCGAAGTTGAGGCCCAAGCCTCACCTTTAACTTTCCATGATGTGTTGATGTTGCCATTGAAACTCTTACTAACTAATATTGCTTCAAAATGGAAGGGTATATCATGGACAAGTCGTGGAGGCATGTCCTTACCTACTTCCACATCTACCTACAGTATTTTCTTAGCATCCTTTGCACAAGGTTGCATTACTTGTTTGCACAAGGTTGCAGAGGTTTCATCTGCTGAACCAGTCGAGAGATTCATGTTGCCATTTGAGGCAACAGGACCGCTCCAAAGCACTGTACCATTGAAGGAAATGGTTATGCGTTTCTTTGATGATTCAGTTGTTCCAATAGTAGATGATTGGGGCAGCTGTATAGGATTGGGGCACCGTGAAGGCTGCACTCAGTTGGACTTGAATGCTTCGCTTTCAACAATGATGAGAAGCCCGCCTCCCAATGTTACAACTACAACATCGGTTGCTCATGTTGTTGATTTGATTTTGGAAAAGGGCTACCCAATGTTTATCATTGTAAAGTACACCAGCTCATACGGTACTGCATACAACTCAAGGGCAGTTGGAGTTTTTACATCACAACAATTGTATAGGCTTATCTCACCTGCATTTGAATCACTCGGGCCAAAACTTTCAATCTTTAGAAGATAA 1596 0.4311 MLEIYNTLTPPVSNSNPLSSFLITSSSSSSSAPARCCLKSNANPREKNLKCLTSRIVQLTHRRQLHQIFQEIEIARKRYGRLNTIFMNAVMEACVHCGNIDSALRIFDEMNKPGSFGVDTVTYATLLKGLGESRKVDEAFQLLESVEKGTVPGNPKLSASLIFGLLNALIEAGESEGDLRRANGLLARYGYVLHEGGSFSVSVYNLLRKPDRFTYNTLILACVKSQGMDTAVKFLENMKDEAQKSTHNDVLPDIVTYTTLLKAKDLSSVLKIVLEMKSCQEFYIDRTAYTATVDALLNCGSICCYFILILPACWLKSEVEAQASPLTFHDVLMLPLKLLLTNIASKWKGISWTSRGGMSLPTSTSTYSIFLASFAQGCITCLHKVAEVSSAEPVERFMLPFEATGPLQSTVPLKEMVMRFFDDSVVPIVDDWGSCIGLGHREGCTQLDLNASLSTMMRSPPPNVTTTTSVAHVVDLILEKGYPMFIIVKYTSSYGTAYNSRAVGVFTSQQLYRLISPAFESLGPKLSIFRR 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g0553 531 ProSiteProfiles CBS domain profile. 456 521 IPR000644 -
Lele28g0553 531 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 211 245 IPR002885 -
Lele28g0553 531 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 119 153 IPR002885 -
Lele28g0553 531 PANTHER OS09G0431600 PROTEIN 23 209 IPR044781 -
Lele28g0553 531 SUPERFAMILY CBS-domain pair 394 495 IPR046342 -
Lele28g0553 531 Pfam PPR repeat 88 112 IPR002885 -
Lele28g0553 531 Pfam PPR repeat 121 145 IPR002885 -
Lele28g0553 531 Gene3D Tetratricopeptide repeat domain 198 306 IPR011990 GO:0005515
Lele28g0553 531 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 83 117 IPR002885 -
Lele28g0553 531 Gene3D Tetratricopeptide repeat domain 24 188 IPR011990 GO:0005515
Lele28g0553 531 Pfam PPR repeat family 210 263 IPR002885 -
Lele28g0553 531 TIGRFAM PPR: pentatricopeptide repeat domain 121 145 IPR002885 -
Lele28g0553 531 TIGRFAM PPR: pentatricopeptide repeat domain 88 110 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g0553 Lele-ChrLele28 3513344 3517742 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g0553 83 302 Glycosyltransferase AT1G05670 22.768 3.49e-06 48.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0547 25 3475106 3479426 Lele28g0553 28 3513344 3517742 hybridization
Lele26g0563 26 3576790 3582398 Lele28g0553 28 3513344 3517742 hybridization