Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele26g0563 ATGATCGTTTTCAAGAAATCACAAAATGTTACTGTGGAGGATGGGCCCACCACTTTAGTCCAGTCTTATTCGCTATTTTACCTGGTCGGAGATCCTCCTTTCTGCACTGTGTTCCATGGCCGATGGGTAGCCAGCTTCTTCTTTGTATCATTCCACTCCCACGCTGCCACCACCAACAATGCTCGAAATTCACATTCTCTCCCACCGCACTCCACCTCTAACTCAAATCCGCTTTCTTCCTTTCTTATCACCTCTTCTTCTTCTTCCTCTTTTTCTCCAGCTCGGCGTCGCTTGAAGAGCAACGCTAATCCGAGTGAAAAGAACCTTAAGTGCCTTACTTCCCGCATCGTCCAACTCACCTACCGGAGGCAGCTTCTCCAGATTTTTCAAGAGATTGAAATTGCCAGGAAACGTTATGGGAGGCTGAACACAATTGTCATGAACGCGGTCATGGAGGCCTGTGTTCATTGCGGTACCGCACCTGGAAATCCAAAGCTGTCAGCATCATTGATCTATGGTCTGCTAAATGCCATAATCGAAGCAGGGGAGTCTGCAGGAGACTTACGTCGTGCCAATGGCCTCCTTGCTCGTTATGGTTATGTACTTCGTGAAGGTGGCAGTTTCTCAGTCTCAGTATACAACTTACTCATAAAGGGGTATATCACCGCAGATGAAGCACAGAAATCTACCCACAATAATGTTTTGCCAGATATTGTCACATATACGACACTGCTCAAGGGTTTTGGGCAGGCCAAAGATCTCTCGTCAGTCCTGAAAATAGTGCTGGAAATGAAATCATATCAGGAATTGTATATTGATCGAACAGCTTACACTGCAACAGTTGATGCTTTATTAAACTGTGGCTCAATTAAGGGTGCTCAACGCATCTTTGGAGAAATACTGAAGCTGGCTGGTTGGAATCCGGAGTTGATGCCCAAGCCTCACCTTTATCTTTCCATGATGCGTGCTTTAGCTTCTAGAGGAGATTACAATGTAGTAACAAACTTGCATAGGCGGCTTTTGCCAGATTCTGCAGGAACCATCTTGCCACTTGCCCAAAAAGAAGCCGATCATCTTCTCATGGAAGCAGCACTGAATAATGGTCAGGTTGATGTTGCCATTGAAACTCTTACTAATATTGCTTCAAAATGGAAGGGTATATCATGGACAAGTCGTGAGGCATGGTTTCACCCAGTCGAGAGATTCATGTGGCCATTTGAGGCAACAGGACCGCTACAAGGCACTGTACCATTGAAGGAAATGGTTATGCGTTTCTTTGATGATGCAGCTGTTCCAATAGTAGATGATTGGGGCAGCTGTATAGGATTGGTGCACCGTGAAGACTGCACTCAGTTGGACTTGAATGCTTCGCTTTCAACAATGATGAGAAGCCCGCCTCCCATTGTTACAACTACAACATCGGTTGCTCATGTTGTTGATTTGATTTTGGAAAAGGGCTACCCAATGGTTATCATTGTAAAGTACACCAGCTCATACGGTATTGAATACAACTCAAGGGCAGTTGAAGTTTTTACATCACAACAATTGTATAGGCTTATCTCACCTGCATTTGAATCACTCGGGCCAAAACTTTCAATCTTTAGAAGATAA 1611 0.4469 MIVFKKSQNVTVEDGPTTLVQSYSLFYLVGDPPFCTVFHGRWVASFFFVSFHSHAATTNNARNSHSLPPHSTSNSNPLSSFLITSSSSSSFSPARRRLKSNANPSEKNLKCLTSRIVQLTYRRQLLQIFQEIEIARKRYGRLNTIVMNAVMEACVHCGTAPGNPKLSASLIYGLLNAIIEAGESAGDLRRANGLLARYGYVLREGGSFSVSVYNLLIKGYITADEAQKSTHNNVLPDIVTYTTLLKGFGQAKDLSSVLKIVLEMKSYQELYIDRTAYTATVDALLNCGSIKGAQRIFGEILKLAGWNPELMPKPHLYLSMMRALASRGDYNVVTNLHRRLLPDSAGTILPLAQKEADHLLMEAALNNGQVDVAIETLTNIASKWKGISWTSREAWFHPVERFMWPFEATGPLQGTVPLKEMVMRFFDDAAVPIVDDWGSCIGLVHREDCTQLDLNASLSTMMRSPPPIVTTTTSVAHVVDLILEKGYPMVIIVKYTSSYGIEYNSRAVEVFTSQQLYRLISPAFESLGPKLSIFRR 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele26g0563 536 CDD CBS_pair_SF 430 493 - -
Lele26g0563 536 SUPERFAMILY CBS-domain pair 422 510 IPR046342 -
Lele26g0563 536 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 237 267 IPR002885 -
Lele26g0563 536 PANTHER OS09G0431600 PROTEIN 60 158 IPR044781 -
Lele26g0563 536 TIGRFAM PPR: pentatricopeptide repeat domain 239 266 IPR002885 -
Lele26g0563 536 Pfam Pentatricopeptide repeat domain 230 265 IPR002885 -
Lele26g0563 536 Gene3D - 408 509 IPR046342 -
Lele26g0563 536 Gene3D Tetratricopeptide repeat domain 173 403 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele26g0563 Lele-ChrLele26 3576790 3582398 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele26g0563 177 341 Glycosyltransferase AT1G05670 26.163 2.26e-06 48.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele26g0563 26 3576790 3582398 Lele27g1530 27 21218235 21222487 hybridization
Lele26g0563 26 3576790 3582398 Lele28g0553 28 3513344 3517742 hybridization