Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g0547 ATGCTCGACATTCGCATTCTCTCGCATCGCACTCCACCTCAATCTAACTCAAACCCGCTTTCTCCCTTTTTCATCACCTCTTCTTCTTATTCTTCTGCTCCAGCTCGGCGTCGCTTGAAGAGCACCGCTAATCCGCGTAAAAAGAACCTTAAGTGCCTTACTTCTCGTATTGTCCAACTCACCCACCGAAGGCAGCTTCACCAGATTTTTCAAGAGATTGACATTGCCAAGAAACGTTATGGGAGGTTGAACACAATTGTCATGAACGCGGTCATGGAGGCCTGTGTTCATTGCGGTGATATTGATTCAGCTCTTAGGATATTTGATGACATGACAAAACCGGGGAGCTGTGGCGTGGATACTGTTACGTATGCCACGCTTTTGAAGGGATTAGGCGAGTTGCGGAAAGTTGATGAAGCCTTTCAATTGCTTGAATCTGTGGAGAAGGGTACCGCACCTGGAAATCCAAAGCTGTCAGCATCATTGATCTTTGGTCTGCTAAATGCCATAATCGAAGCAGGAGACTTACGTCGTGCCAATGGCCTCCTTGCTCGTTATGGTTATGTATTTCGTGAAGGAGGCAATTTCTCAGTCTCAGTATACAACTTACTCATAAAGGGGTATATCACCGCAGGTTTTCCTCTAGATGCTGTAAACTTGCACAATGAAATGTCACGTCATGGAATGAAGCCTGATCGGCTCACCTACAACTCTCTCATATTAGCATGTGTCAAGAGTCAAGACATGGATACTGCTACGCAATTTTTTGACAACATGAAGAATGAAGCACAGAAATCTACCCACAATACCGTTTTGCCAGATATTGTCACATATACGACACTGCTCAAGGGTTTTGGACGGGCCAAAGATCTCTCGTCAGTCCTGAAAATAGTGCTGGAAATGAAATCGTGTCAGGAATTGTATATTGATCGAACAGCTTACACCGCAACGATTGATGCTTTATTAAACTGTGGCTCAATTAAGGGTGCTCAATGCATCTTTGGAGAAATACTGAAGCTGGCTGGTTGGAATCCAGAGATGAGGCCCAAGCCTCACCTTTATCTTTCCATGATGCGTGCTTTTGCCTCTAGAGGAGATTACAATGTAGTAAAAAACTTGCATAGGCGGCTTTTGCCAGATTCTGCAGGAACCATCTTGTCAGTTGCCCAAAAAGAAGCTGATCATCTTCTCATGGAAGCAGCACTGAATAGTGGTCAGGTTGATGTTGCAATTGAAACTCTTACTACTATTGCTTCAAAATGGAAGGGTATATCATGGACAAGTCGTGGAGGCATGGTGACTCTGCGCATTGAGGCCACATTGGGATTCTCAAAATCCATATTCAGTCCTTACCTACTTCCACAGGTTTCACCTGCTGAACCAGTTGAGAGATTCATGTTGCCATTTGAAACAATAGGACCACTGCAAGGCACTGTCCCATTGAAGGAAGTGGTTATGCGTTTCTTTGATGATCCAATTGTTCCAATAGTAGATGATTGGGGCAGCTGTACAGGATTGGTGCACCGTGAAGACTGCACTCAGTTGGACTTGAATGCGCCGCTTTCAACAATGATGAGAAGCCCGCCTCCCACTGTTACAACTTCAACATCAGTTGGTCATGTTATCGATTTGATTTTGGAGAAGGGCTACCAAATGGTTATCATTGTAAAGTACACCAGCTCATACGGTACCGCATACAACTCAAGGGCAGTTGGAGTTTTTACATCACAACAATTGTATAGGTTTATCACACCTGCATTTGAATCACTAGGGCCAAAACTTTCAATCTTTAGAAGATAA 1800 0.4411 MLDIRILSHRTPPQSNSNPLSPFFITSSSYSSAPARRRLKSTANPRKKNLKCLTSRIVQLTHRRQLHQIFQEIDIAKKRYGRLNTIVMNAVMEACVHCGDIDSALRIFDDMTKPGSCGVDTVTYATLLKGLGELRKVDEAFQLLESVEKGTAPGNPKLSASLIFGLLNAIIEAGDLRRANGLLARYGYVFREGGNFSVSVYNLLIKGYITAGFPLDAVNLHNEMSRHGMKPDRLTYNSLILACVKSQDMDTATQFFDNMKNEAQKSTHNTVLPDIVTYTTLLKGFGRAKDLSSVLKIVLEMKSCQELYIDRTAYTATIDALLNCGSIKGAQCIFGEILKLAGWNPEMRPKPHLYLSMMRAFASRGDYNVVKNLHRRLLPDSAGTILSVAQKEADHLLMEAALNSGQVDVAIETLTTIASKWKGISWTSRGGMVTLRIEATLGFSKSIFSPYLLPQVSPAEPVERFMLPFETIGPLQGTVPLKEVVMRFFDDPIVPIVDDWGSCTGLVHREDCTQLDLNAPLSTMMRSPPPTVTTSTSVGHVIDLILEKGYQMVIIVKYTSSYGTAYNSRAVGVFTSQQLYRFITPAFESLGPKLSIFRR 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g0547 599 Pfam Pentatricopeptide repeat domain 271 302 IPR002885 -
Lele25g0547 599 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 84 118 IPR002885 -
Lele25g0547 599 ProSiteProfiles CBS domain profile. 524 589 IPR000644 -
Lele25g0547 599 Gene3D Tetratricopeptide repeat domain 28 189 IPR011990 GO:0005515
Lele25g0547 599 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 232 266 IPR002885 -
Lele25g0547 599 Pfam CBS domain 524 583 IPR000644 -
Lele25g0547 599 TIGRFAM PPR: pentatricopeptide repeat domain 200 232 IPR002885 -
Lele25g0547 599 TIGRFAM PPR: pentatricopeptide repeat domain 122 146 IPR002885 -
Lele25g0547 599 TIGRFAM PPR: pentatricopeptide repeat domain 276 304 IPR002885 -
Lele25g0547 599 TIGRFAM PPR: pentatricopeptide repeat domain 235 261 IPR002885 -
Lele25g0547 599 TIGRFAM PPR: pentatricopeptide repeat domain 88 112 IPR002885 -
Lele25g0547 599 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 274 304 IPR002885 -
Lele25g0547 599 Gene3D - 481 583 IPR046342 -
Lele25g0547 599 SUPERFAMILY CBS-domain pair 463 583 IPR046342 -
Lele25g0547 599 Pfam PPR repeat family 198 244 IPR002885 -
Lele25g0547 599 Pfam PPR repeat family 84 131 IPR002885 -
Lele25g0547 599 Gene3D Tetratricopeptide repeat domain 190 440 IPR011990 GO:0005515
Lele25g0547 599 CDD CBS_pair_SF 468 556 - -
Lele25g0547 599 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 197 231 IPR002885 -
Lele25g0547 599 PANTHER OS09G0431600 PROTEIN 25 588 IPR044781 -
Lele25g0547 599 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 120 150 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g0547 Lele-ChrLele25 3475106 3479426 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele25g0547 120 420 Glycosyltransferase AT1G05670 24.422 1.81e-14 74.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0547 25 3475106 3479426 Lele27g1530 27 21218235 21222487 hybridization
Lele25g0547 25 3475106 3479426 Lele28g0553 28 3513344 3517742 hybridization