Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g0521 ATGGCGTTAGCTTGTAGGGTTTTATTATCAGTGAGGAAGAGGTTCGCTGGAAGGTTTAACTTTCTAGCATTTCCTTCAAGCTCTCACCATTTGAATTTCCACAATGAATCGAGTTCAAATCCCTTGCTTATCAAATTACTTCGGGTATCCAATTCGCGCCTTAAACCTACGCTGGATCAGGAATTTAGTTCCCTCAAAAGTTCCGAATTTTCTTGGGAATCTCTGGTTACCTGTCTTACGCCTTCATCTCCTGAGAAAGCTCGGCTGGTTTTGGAATGGATTTTGGAGAAATTGCTGAAAGACAATGAAAGAAATCACAGTGCCTTCTCCGAATACATATTTCTTTGCGGCAAGCTTCAGAATGTGCGACTCGCAATGCAAGCGTTTGCTTCTATGGAGGCTAATGGAGTTAAACCCACCTCCCTGGTTTTTAATTCCCTTATAAATACTTGCCTGTGTTCCCATGACATTAATACAGCATTTAGCTTATTTGAGATCATGGAAAGTTCGGAGAGCTATAAACCTGATTTTAATACTTATAATATGTTTATTACAGCATTCTCAATGTCAGGGAACGTTGATGCCATGTTAGCTTGGTACTCAGCTAAAAAAGCTTCTGGATTCGGTCATGATCTTCAAACATTTGAATCCCTAATATCAGGTTGTATCAAATCCAGAAATTTTGAACTTGCTGATGGAATTTATGATGAAATGATGTCATCAGGAATTATACCTAGCATATCCATTCTGGAAAATATGTTTGAAGGGCTTTGCAAGCAAAAGAGTTTGGGTCGAGCCGAGCAGTTCTTCAAGTCTGTGGTAGGCGTCGGATGGGAGATCAATGAAAACATGACTGATAAATTAATGGCACTGTATCAAGAAGTTGGGCAAGTGAAAAAGATGGAGGAGCTGCTTGAAACTATGGTGAAGTCCCATCCTATTACCGATGTTGTCCTCTCCCGAATTCATTGTGGCATCATACGAATGTATGCAAAACTGGATAGATTGGACGATGTAGAGTTTGCCGTGGGAAGAATGTTGAAACAAGGGCAAGCATTTACAAATGCAGATGATGTTGAAAAGGTTATCTGCTCATACTTCAGAAGAGAAGCTTATGATAGGCTAGATATATTCTTGGAATGTATAGCGAGTAGCTATACGCCCAGCAGATCCACTTACGTTTTGTTGATATCCGGTTATAGAAGAGCTGGATTACACGAGAAGGTAGATTCAACGATTGAAGCCATGGAATCAGCTGGGCCGATCTTGTGGGATTTTAGAGTTTCTATTCTCGATATGGCATTTCCTATGGCATCAGATATGCTTCAGAGAAACTTGGTCGTCAAAAGATGGAATTTTGCCTCGTCATAG 1371 0.4041 MALACRVLLSVRKRFAGRFNFLAFPSSSHHLNFHNESSSNPLLIKLLRVSNSRLKPTLDQEFSSLKSSEFSWESLVTCLTPSSPEKARLVLEWILEKLLKDNERNHSAFSEYIFLCGKLQNVRLAMQAFASMEANGVKPTSLVFNSLINTCLCSHDINTAFSLFEIMESSESYKPDFNTYNMFITAFSMSGNVDAMLAWYSAKKASGFGHDLQTFESLISGCIKSRNFELADGIYDEMMSSGIIPSISILENMFEGLCKQKSLGRAEQFFKSVVGVGWEINENMTDKLMALYQEVGQVKKMEELLETMVKSHPITDVVLSRIHCGIIRMYAKLDRLDDVEFAVGRMLKQGQAFTNADDVEKVICSYFRREAYDRLDIFLECIASSYTPSRSTYVLLISGYRRAGLHEKVDSTIEAMESAGPILWDFRVSILDMAFPMASDMLQRNLVVKRWNFASS 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g0521 456 Pfam Pentacotripeptide-repeat region of PRORP 121 196 IPR033443 -
Lele28g0521 456 Gene3D Tetratricopeptide repeat domain 199 444 IPR011990 GO:0005515
Lele28g0521 456 Gene3D Tetratricopeptide repeat domain 42 194 IPR011990 GO:0005515
Lele28g0521 456 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 211 245 IPR002885 -
Lele28g0521 456 PANTHER EXPRESSED PROTEIN 34 420 IPR044179 GO:0003729
Lele28g0521 456 TIGRFAM PPR: pentatricopeptide repeat domain 214 246 IPR002885 -
Lele28g0521 456 Pfam PPR repeat 214 243 IPR002885 -
Lele28g0521 456 Pfam PPR repeat 391 420 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g0521 Lele-ChrLele28 3310323 3312551 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g0521 118 403 Glycosyltransferase AT1G05670 21.951 7.07e-13 68.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0511 25 3222271 3222815 Lele28g0521 28 3310323 3312551 hybridization
Lele26g0529 26 3348583 3350814 Lele28g0521 28 3310323 3312551 hybridization