Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g0511 ATGGTCAGCAAGATTCAGAATGTGCGACTCGCAATGCAAGCGTTTGCTTCTATGGAGGCTAATGGAGTTAAACCCACCTCCCTGGTTTTTAATTCCCTTATAAATACTTGCCTGAGTTCCCATGACATTGATACAGCATTTAGCTTATTTGAGATCATGGAAAGTTCGGAGAGCTATAAACCTGATTTTCATACTTATAATATGTTTATTACAGCAATCTCAATGTCAGGGCACGTTGATGCCATGTCAGCTTCGTACTCAGCTAAAAAGGCTGCCGGATTCGGTCCTGATCTTGAAACATTTCAATCCCTAATATCAGGTTGTATCAAATCAAGAAATTCTGAATTTGCGGATGGAATTTATGAAGAAATGATGTCATTAGGAATTATACCTAGTATATCCATTCTGGAAAATCTGGTTGAAGGGCTTTGCAAGCGAAAGAGTTTGGGTCGAGCCGAGTAG 462 0.3983 MVSKIQNVRLAMQAFASMEANGVKPTSLVFNSLINTCLSSHDIDTAFSLFEIMESSESYKPDFHTYNMFITAISMSGHVDAMSASYSAKKAAGFGPDLETFQSLISGCIKSRNSEFADGIYEEMMSLGIIPSISILENLVEGLCKRKSLGRAE 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g0511 153 Pfam PPR repeat family 25 72 IPR002885 -
Lele25g0511 153 PANTHER EXPRESSED PROTEIN 2 152 IPR044179 GO:0003729
Lele25g0511 153 Pfam PPR repeat 100 129 IPR002885 -
Lele25g0511 153 Gene3D Tetratricopeptide repeat domain 1 153 IPR011990 GO:0005515
Lele25g0511 153 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 97 131 IPR002885 -
Lele25g0511 153 TIGRFAM PPR: pentatricopeptide repeat domain 100 132 IPR002885 -
Lele25g0511 153 TIGRFAM PPR: pentatricopeptide repeat domain 29 62 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g0511 Lele-ChrLele25 3222271 3222815 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele25g0511 4 152 Glycosyltransferase AT1G05670 26.667 1.31e-12 62.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0511 25 3222271 3222815 Lele27g1568 27 21487019 21488185 hybridization
Lele25g0511 25 3222271 3222815 Lele28g0521 28 3310323 3312551 hybridization