Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele26g0529 ATGGCGTCAGCTCGTAGGGTTTTATTATCAGTGAGGAAGAGGTGCGCTGGAAAGTTTAACTTTATAGCATTTCCATCAAGCTCTCACCATTTGAATTTCCACAATGAATCGAGTTCAAATCCCCTGCTTATCAAATTACTTCGGGTATCCAATTCGCGCCTTAAACCTACGCTGGATCAGGAATTTAGTTCCCTCAAAAGTTCCGAATTTTCTTGGGAATCTCTGGTTACCTGTCTTACGCCTTCGGCTCCTGAGAAAGCACGGCTGGTTTTGGAATGGATTTTGGAGAAATTGCTTAAAGACAACGAGAGAAATCACAGTGCCTTCTCCGAATACATATTTCTTTGCGGCAAGCTTCAGAATGTGCGACTCGCAATGCAAGCGTTTGCTTCTATGGAGGCTAATGGAGTTAAACCCACCTCCCTGGTTTTTAATTCCCTTATAAATACTTGCCTGTGTTCCCATGACATTAATACAGCATTTAGCTTATTTGAGATCATGGAAAGTTCGGAGAGCTATAAGCCTGATTTCAATACTTATAATATGTTTATTACAGCATTCTCAATGTCTGGGAACGTTGATGCCATGTTAGCTTGGTACTCAGCTAAAAAAGCTGCTGGATTCGGTCATGATCTTCAAACGTTTGAATCCCTAATATCAGGTTGTATCAAATCAAGAAATTTTGAACTTGCTGATGGAATTTATGATGAAATGATGTCATCAGGAATTATACCTAGCATATCCATTCTGGAAAAAATGTTTGAAGGGCTTTGCAAGCAAAAGAGTTTGGGTCGAGCCGAGCAGTTCTTCAAGTCTGTGGTAGGCGTTGGATGGGAGATCAATGAAAACATGACTGATAAATTAATGGCACTGTATCAAGAAGTTGGGCAAGTGAAAAAGATGGAGGAGCTGCTTGAAACTATGATGAAGTTCCATCCTATTACCGATGTTATCCTCTCCCGAATTCATTGTGGCATTATACGAATGTATGCAAAACTGGATAGATTGGACGATGTAGAGTTTGCCGTGGGAAGAATGTTGAAACAAGGGCTATCATTCACAAATGCAGATGATGTTGAAAAGGTTATCTGCTCATGCTTCAGAAGAGAAGCTTATGATAGGCTAGATATATTCTTGGAATGTATAGCGAGTAGCTATACGCCCAGCAGATCCACTTACGTTTTGTTGATATCTGGTTATAGAAGAGCTGGATTACACGAGAAGGTAGATTCAACGATTGAAGCCATGGAATCAGCTGGGCCGATCTTGTGGAATTTTAGAGTTTCTATTCTCGATATGGCATTTCCTATGGCATCAGATATGCTTCAGAGAAACTTGGTCGTCAAAAGATGA 1353 0.405 MASARRVLLSVRKRCAGKFNFIAFPSSSHHLNFHNESSSNPLLIKLLRVSNSRLKPTLDQEFSSLKSSEFSWESLVTCLTPSAPEKARLVLEWILEKLLKDNERNHSAFSEYIFLCGKLQNVRLAMQAFASMEANGVKPTSLVFNSLINTCLCSHDINTAFSLFEIMESSESYKPDFNTYNMFITAFSMSGNVDAMLAWYSAKKAAGFGHDLQTFESLISGCIKSRNFELADGIYDEMMSSGIIPSISILEKMFEGLCKQKSLGRAEQFFKSVVGVGWEINENMTDKLMALYQEVGQVKKMEELLETMMKFHPITDVILSRIHCGIIRMYAKLDRLDDVEFAVGRMLKQGLSFTNADDVEKVICSCFRREAYDRLDIFLECIASSYTPSRSTYVLLISGYRRAGLHEKVDSTIEAMESAGPILWNFRVSILDMAFPMASDMLQRNLVVKR 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele26g0529 450 TIGRFAM PPR: pentatricopeptide repeat domain 214 246 IPR002885 -
Lele26g0529 450 Gene3D Tetratricopeptide repeat domain 43 194 IPR011990 GO:0005515
Lele26g0529 450 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 211 245 IPR002885 -
Lele26g0529 450 PANTHER EXPRESSED PROTEIN 34 420 IPR044179 GO:0003729
Lele26g0529 450 Pfam PPR repeat 179 201 IPR002885 -
Lele26g0529 450 Pfam PPR repeat 214 243 IPR002885 -
Lele26g0529 450 Pfam PPR repeat 391 420 IPR002885 -
Lele26g0529 450 Pfam Pentatricopeptide repeat domain 118 151 IPR002885 -
Lele26g0529 450 Gene3D Tetratricopeptide repeat domain 322 443 IPR011990 GO:0005515
Lele26g0529 450 Gene3D Tetratricopeptide repeat domain 197 321 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele26g0529 Lele-ChrLele26 3348583 3350814 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele26g0529 132 420 Glycosyltransferase AT1G05670 21.000 3.75e-09 57.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele26g0529 26 3348583 3350814 Lele27g1568 27 21487019 21488185 hybridization
Lele26g0529 26 3348583 3350814 Lele28g0521 28 3310323 3312551 hybridization