Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g0268 ATGCCAGCGTCCCCTTCAGAAAACCGAACCAAATGGCGGAAGCGCAAGAGAGAACCCCAAATCAGCCGGCGGCAACAGAAGCACGAGGAGGAGGAGGACGACGAAGAAGACCCCAATGGCGAGGACGACCCCCTCGAGCGACAGGATGATTCCGAGGACCAAACGCAACACCCTAACCCCCAATCCGGTTCTAATTCTCAAGCCCAGCTCGAGATCGAGGTATTGTCCGAGGATGGAGTCCAAATTTCTCAGTTCCCTAGAGCGATCAAGCGCACTGTCAATCGCCCTCACGCATCCGTCACGGCAATTGTCGCTCTGGAGCGTGCCAATGAGTCTGGTGACAACAAGGGTCAGTTGCAGAATTCTCCATTTTTGGAGAGTGTGTCGCACGGGCAGCTCCAGGCGCTTTCCACCGTGCCCGCCGATAGTTCAGCTTTGGATCAGGACCGTAACGAGGGAAGTAATTCGGCTTATGTGATTACCCCGCCTCCCGTACTGGAAGGCCGTGGCATTGTCAAGCGGTTTGGGAGTAGGGTTCTGGTAGTTCCAATGCATTCAGAATGGTTTTCACCAGCTACTGTGCATCGGCTTGAAAGACAAGTGGTGCCACGTTTTTTCTCTGGAAAATCACCGGATCATACCCCAGAGAAGTACATGGAATGTAGAAATTATATAGTTGCAAGATACATGGAAGACCTGGGGAAGAGGATTACAATTTCTGATTGCCAGGGTTTGGTAGTTGGGGTTGATAATGAAGATTTAACTCGAATTTTCCGGTTCCTTGATCATTGGGGAATCATCAACTACTGTACTCAGGTGTCAAGTCACGAGCCTTGGAATGATGAGTCTTACCTGAAGGATGAGGCAAGCGGTGAGATTTGTGTGCCATCAGATGCCTTAAAATCTATAGATGGTTTGATCAAATTTGACAAGCCAAAGTGTAAAATCAAAGAAGACGAAATTTATTCATCATTGAAGACTCAGAATGCTGATATTTCTTATTTGGAGGACAGAATAAGAGAGAATCTATCTGAAAATCATTGCAATTATTGTTCCCGTGCTCTTCCTGCTGTTTACTATCAGTCACAAAAAGAGGCTGATATTCTTCTCTGCACTGATTGTTTCCATGATGGGAGATTTGTCGTTGGTCATTCAAGTATAGATTTTATAAGGAATGATTCAACAAGAGATTATGGTGATCTAGATGGGGATAGTTGGACTGATCAAGAAACCTTGTTGCTGCTTGAGGCAATGGAGATTTACAATGAGAACTGGAATGAAATTGCTGAACATGTTGGTACCAAGTCAAAAGCACAATGTATTCTCCATTTTCTCCGTCTACCCATGGAAGATGGAAAATTGGAAAATATCAATGTCCCAAGAATGTCATTGTCATCAAATATGTCAAATAGACATGATTGTGAAAGATTGCGTTCAAATTTAGATGCAGATTTAGCAGGACCAACTCAGAGCATTGATCCCAATAGCAGGCTCCCTTTTTCAAATTCTGAAAATCCTGTTATGGCTCTGGTTGCCTTTTTGGCCTCTGCTATCGGACCTAGAGTAGCTGCTGCTTGTGCACATGCAGCATTAGCAGAGTTGTCAGAGAATAATTCTGGTAGCATGTCACAGACAGAAGCACCCGGGTATAGTAACAGGATGAACTTGGAGAGCACTCATAGCGAGGATGGTGGTCTTGGAGAAATTGCAAACCCAAATCAGCAAGATGAGGACGAGGCAAAAGCGCATGGTTCACAGGGTCCAAATGAGGGTGGGCCCATCCCTCTATCTGCTGAGAAAGTTAAAGATGCTGCTAAGGCAGGCTTGTCTGCTGCAGCAATGAAAGCTAAACTGTTTGCAGATCATGAAGAAAGAGAAATTCAGAGGCTATGTGCCAATATTATAAACCATCAGCTGAAAAGATTGGAATTGAAGCTCAAGCAGTTTGCTGAAATTGAAACGCTGTTGATGAAAGAATGTGACCAATTGGAGAAGGGAAGACAAAGGTTTGCTGCTGAACGTTCCCGTCTTTTATCAGCATGGCTTGGATCTGGTGTAGCCACAAACACATCAGGTGTTGGTCCCTCTACAGTTAGCAACAACAACGGCAACAGTAGACAACAAATGGCCTTTGGATCTCCTCCACAGCCTAGTGTCTCAGGGTACACAAATGGCCAACCAGTTCATCCACACATGTCCTTTGTCCCACGGCCTTCCATGTTTGGTGGGTTAGGACAAAGGTTACCCCTTTCTATGATACAACAATCACAATCAAATTCTCCAAATCCCATGTTTAAAGCCCCCGGTAATGTGCAGCCTTCTAACAATCATCCATTGTTGAGGCCTGTATCAGGTACTAACTCTGGTTTAGGTTAA 2376 0.4524 MPASPSENRTKWRKRKREPQISRRQQKHEEEEDDEEDPNGEDDPLERQDDSEDQTQHPNPQSGSNSQAQLEIEVLSEDGVQISQFPRAIKRTVNRPHASVTAIVALERANESGDNKGQLQNSPFLESVSHGQLQALSTVPADSSALDQDRNEGSNSAYVITPPPVLEGRGIVKRFGSRVLVVPMHSEWFSPATVHRLERQVVPRFFSGKSPDHTPEKYMECRNYIVARYMEDLGKRITISDCQGLVVGVDNEDLTRIFRFLDHWGIINYCTQVSSHEPWNDESYLKDEASGEICVPSDALKSIDGLIKFDKPKCKIKEDEIYSSLKTQNADISYLEDRIRENLSENHCNYCSRALPAVYYQSQKEADILLCTDCFHDGRFVVGHSSIDFIRNDSTRDYGDLDGDSWTDQETLLLLEAMEIYNENWNEIAEHVGTKSKAQCILHFLRLPMEDGKLENINVPRMSLSSNMSNRHDCERLRSNLDADLAGPTQSIDPNSRLPFSNSENPVMALVAFLASAIGPRVAAACAHAALAELSENNSGSMSQTEAPGYSNRMNLESTHSEDGGLGEIANPNQQDEDEAKAHGSQGPNEGGPIPLSAEKVKDAAKAGLSAAAMKAKLFADHEEREIQRLCANIINHQLKRLELKLKQFAEIETLLMKECDQLEKGRQRFAAERSRLLSAWLGSGVATNTSGVGPSTVSNNNGNSRQQMAFGSPPQPSVSGYTNGQPVHPHMSFVPRPSMFGGLGQRLPLSMIQQSQSNSPNPMFKAPGNVQPSNNHPLLRPVSGTNSGLG 791
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g0268 791 FunFam SWI/SNF complex subunit SMARCC2 isoform C 402 452 - -
Lele28g0268 791 MobiDBLite consensus disorder prediction 754 791 - -
Lele28g0268 791 MobiDBLite consensus disorder prediction 31 49 - -
Lele28g0268 791 Pfam SWIRM domain 183 269 IPR007526 GO:0005515
Lele28g0268 791 ProSiteProfiles SANT domain profile. 401 452 IPR017884 -
Lele28g0268 791 CDD SANT 405 447 IPR001005 -
Lele28g0268 791 Pfam SWIRM-associated region 1 607 677 IPR032451 -
Lele28g0268 791 ProSiteProfiles SWIRM domain profile. 180 278 IPR007526 GO:0005515
Lele28g0268 791 MobiDBLite consensus disorder prediction 701 722 - -
Lele28g0268 791 ProSiteProfiles Zinc finger ZZ-type profile. 343 397 IPR000433 GO:0008270
Lele28g0268 791 SMART sant 402 450 IPR001005 -
Lele28g0268 791 PANTHER SWI/SNF COMPLEX-RELATED 386 677 - -
Lele28g0268 791 FunFam SWI/SNF complex subunit SMARCC2 isoform c 186 274 - -
Lele28g0268 791 ProSiteProfiles Myb-like domain profile. 398 448 IPR001005 -
Lele28g0268 791 MobiDBLite consensus disorder prediction 536 559 - -
Lele28g0268 791 Gene3D - 186 273 IPR036388 -
Lele28g0268 791 MobiDBLite consensus disorder prediction 536 596 - -
Lele28g0268 791 MobiDBLite consensus disorder prediction 1 66 - -
Lele28g0268 791 SUPERFAMILY Homeodomain-like 179 271 IPR009057 -
Lele28g0268 791 SUPERFAMILY Homeodomain-like 403 456 IPR009057 -
Lele28g0268 791 Gene3D - 402 452 - -
Lele28g0268 791 Pfam Myb-like DNA-binding domain 405 447 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g0268 Lele-ChrLele28 1581010 1586077 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g0268 348 444 EF-hand Containing Proteins AT3G07740 33.962 4.98e-11 64.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0248 25 1469933 1475357 Lele28g0268 28 1581010 1586077 hybridization
Lele26g0256 26 1517032 1522064 Lele28g0268 28 1581010 1586077 hybridization