Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele26g0256 ATGCCAGCTTCCCCTTCAGAAAACCGAACCAAATGGCGGAAGCGCAAGAGAGAACCCCAAATCAGCCGGCGGCAACAGAAGCACGAGGACGAGGACGAGGACGAAGAAGACCCCAATGGCGAGGACGACCACCTCGAACGACAGGATGATTCCGAGGACCAAACCCAACACCCTAACCCCCAATCCGGTTCTAATTCTCAAGCCCTGCTCGAGATCGAGGTATTGTCCGACGATGGAGTCCAAATTTCTCAGTTCCCTAGAGCGATCAAGCGCACTGTCAATCGCCCTCACGCATCCGTCACGGCAATTGTCGCTCTGGAGCGTGCCAATGAGTCTGGTGACAACAAGGGTCAGTTGCAGAATTCTCCATTTTTGGAGAATGTGTCGCACGGGCAGCTTCAGGCGCTTTCCACCGTGCCCGCCGATAGTTCAGCTTTGGATCAGGACCGTAACGAGGGAAGTAATTCGGCTTATGTGATCACCCCGCCTCCCGTACTGGAAGGCCGTGGCATTGTCAAGCGGTTTGGGAGTAGGGTTCTGGTAGTTCCAATGCATTCAGAATGGTTTTCACCAGCTACTGTGCATCGGCTTGAGAGACAAGTGGTGCCACGTTTTTTCTCTGGAAAATCACCGGATCATACCCCAGAGAAGTACATGGAAAGTAGAAATTATATAGTTGCAAGATACATGGAAAACCTGGGGAAGAGGATTACAATTTCTGATTGCCAGGGATTGGTAGTTGGGGTTGATAATGAAGATTTAACTCGAATTTTCCGGTTCCTTGATCATTGGGGAATCATCAACTACTGTGCCCAGGTGCCAAGTCACGAGCCTTGGAATGATGAGTCTTACCTGAAGGATGAGGCAAGCGGTGAGATTCGTGTGCCATCAGATGCTTTAAAATCTATAGATGGTTTGATCAAATTTCACAAGCCGAAGTGTAAACTCAAAGCAGACGAAATTTATTCATCATTGAAGACTTTGAATGCTGATATTTCTTATTTGGAGGACAGAATAAGAGAGAATCTATCGGAAAATCATTGCAATTATTGTTCCCGTCCTCTTCCTGCTGTTTACTATCAGTCACAAAAAGAGGCTGATATTCTTCTCTGCACTGATTGTTTCCATGATGGGAGATTTGTCGTTGGTCATTCAAGTATAGATTTTATAAGGGTTGATTCAACAAGAGATTATGGTGATCTAGATGGGGATAGTTGGACTGATCAAGAAACCTTGCTTCTGCTTGAGGCAATGGAGATTTACAATGAGAGCTGGAATGAAATTGCTGAGCATGTTGGTACCAAGTCAAAAGCACAATGTATTCTCCATTTTCTCCGTCTACCCATGGAAGATGGAAAATTGGAAAATATCAATGTCCCAAGAATGTCATTGTCATCAAATATGTCAAATAGACATGATTGTGAAAGATTGCGTTCAAATTTAGATGCGGATTTAGCAGGACCAACTCAGAGCATTGATCCCAATAGCAGGCTCCCTTTTTCAAATTCTGAAAATCCTGTTATGGCTCTGGTTGCCTTTTTGGCCTCTGCTATCGGACCTAGAGTAGCTGCTGCTTGTGCACATGCAGCATTAGCAGAGTTGTCAGAGAATAATTCTGGTAGCATGTCACAGACAGAAGTACCAGGGCATAGTAACAGGACGAACTTGGAGAGCACTCATAGCAAGGATGGTGGTCTTCTTGGAGAAATTGCAAACCCAAATCAGCAAGATGAGGGCGAGGCAAAAGCGCTTGGTTCACAGGGTCCAAATGAGGGTGGGCCCATCCCTCTATCTGCTGAGAAAGTTAAAGATGCTGCTAAGGCAGGCTTGTCTGCTGCAGCAATGAAAGCTAAACTGTTTGCAGATCATGAAGAAAGAGAAATTCAGAGGCTATGTGCCAATATTATAAACCATCAGCTGAAAAGATTGGAATTGAAGCTCAAGCAGTTTGCTGAAATTGAAACGCTGTTGATGAAAGAATGTGACCAAATGGAGAAGGGAAGGCAAAGGTTTGCTGCTGAACGTTCCCGTCTTTTATCAGCATGGCTTGGATCTGGTGTAGCCACAAACACATCAGGTGTTGGTCCCTCTACAGTTAGCAACAACAACGGCAACAGTAGACAACAAATGGCCTTTGGATCTCCTCCACAGCCTAGTGTCTCAGGGTACACAAATGGCCAACCAGTTCATCCACACATGTCCTTTGTCCCACGGCCTTCCATGTTTGGTGGGTTAGGACAAAGGTTACCCCTTTCTATGATACAACAATCACAATCAAATTCTCCAAATCCCATGTTTAAAGCCCCTGGTAATGTGCAGCCTTCTACCAATCATCCATTGTTGAGGCCTGTATCAGGTACTAACTCTGGTTTAGGTTAA 2379 0.4552 MPASPSENRTKWRKRKREPQISRRQQKHEDEDEDEEDPNGEDDHLERQDDSEDQTQHPNPQSGSNSQALLEIEVLSDDGVQISQFPRAIKRTVNRPHASVTAIVALERANESGDNKGQLQNSPFLENVSHGQLQALSTVPADSSALDQDRNEGSNSAYVITPPPVLEGRGIVKRFGSRVLVVPMHSEWFSPATVHRLERQVVPRFFSGKSPDHTPEKYMESRNYIVARYMENLGKRITISDCQGLVVGVDNEDLTRIFRFLDHWGIINYCAQVPSHEPWNDESYLKDEASGEIRVPSDALKSIDGLIKFHKPKCKLKADEIYSSLKTLNADISYLEDRIRENLSENHCNYCSRPLPAVYYQSQKEADILLCTDCFHDGRFVVGHSSIDFIRVDSTRDYGDLDGDSWTDQETLLLLEAMEIYNESWNEIAEHVGTKSKAQCILHFLRLPMEDGKLENINVPRMSLSSNMSNRHDCERLRSNLDADLAGPTQSIDPNSRLPFSNSENPVMALVAFLASAIGPRVAAACAHAALAELSENNSGSMSQTEVPGHSNRTNLESTHSKDGGLLGEIANPNQQDEGEAKALGSQGPNEGGPIPLSAEKVKDAAKAGLSAAAMKAKLFADHEEREIQRLCANIINHQLKRLELKLKQFAEIETLLMKECDQMEKGRQRFAAERSRLLSAWLGSGVATNTSGVGPSTVSNNNGNSRQQMAFGSPPQPSVSGYTNGQPVHPHMSFVPRPSMFGGLGQRLPLSMIQQSQSNSPNPMFKAPGNVQPSTNHPLLRPVSGTNSGLG 792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele26g0256 792 Gene3D - 186 273 IPR036388 -
Lele26g0256 792 PANTHER SWI/SNF COMPLEX-RELATED 329 679 - -
Lele26g0256 792 SUPERFAMILY Homeodomain-like 403 456 IPR009057 -
Lele26g0256 792 MobiDBLite consensus disorder prediction 1 65 - -
Lele26g0256 792 CDD SANT 405 447 IPR001005 -
Lele26g0256 792 FunFam SWI/SNF complex subunit SMARCC2 isoform C 402 452 - -
Lele26g0256 792 SMART sant 402 450 IPR001005 -
Lele26g0256 792 SUPERFAMILY Homeodomain-like 179 272 IPR009057 -
Lele26g0256 792 MobiDBLite consensus disorder prediction 536 561 - -
Lele26g0256 792 ProSiteProfiles SANT domain profile. 401 452 IPR017884 -
Lele26g0256 792 ProSiteProfiles Myb-like domain profile. 398 448 IPR001005 -
Lele26g0256 792 MobiDBLite consensus disorder prediction 755 792 - -
Lele26g0256 792 Pfam SWIRM-associated region 1 608 678 IPR032451 -
Lele26g0256 792 MobiDBLite consensus disorder prediction 536 573 - -
Lele26g0256 792 Pfam SWIRM domain 183 269 IPR007526 GO:0005515
Lele26g0256 792 ProSiteProfiles Zinc finger ZZ-type profile. 343 397 IPR000433 GO:0008270
Lele26g0256 792 Pfam Myb-like DNA-binding domain 405 447 IPR001005 -
Lele26g0256 792 MobiDBLite consensus disorder prediction 31 48 - -
Lele26g0256 792 MobiDBLite consensus disorder prediction 693 723 - -
Lele26g0256 792 FunFam SWI/SNF complex subunit SMARCC2 isoform c 186 274 - -
Lele26g0256 792 ProSiteProfiles SWIRM domain profile. 180 278 IPR007526 GO:0005515
Lele26g0256 792 Gene3D - 402 452 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele26g0256 Lele-ChrLele26 1517032 1522064 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele26g0256 348 444 EF-hand Containing Proteins AT3G07740 33.019 3.67e-10 61.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele26g0256 26 1517032 1522064 Lele27g1840 27 23250713 23257592 hybridization
Lele26g0256 26 1517032 1522064 Lele28g0268 28 1581010 1586077 hybridization