Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g0248 ATGAGGAAGAAAAATTGCCCCGTATTCCAAAGAGCCAAAACCAAAGGCCAAAGCGGAGACCAGAGAGCACTCACTGGGAGAGATCCCTTCTCTCTCTCTCTCTGCCCCTCTTCCCAATTCCACACCCTTTGCGCCAATCAACGACCCCACAATCAAATTTCCCTCTCTCTCCCTCCCTCCCTTAAACCTCTCCTTACCATGCCAGCTTCCCCTTCAGAAAACCGAACCAAATGGCGGAAGCGCAAGAGAGAACCCCAAATCAGCCGGCGGCAACAGAAGCATGAGGAGGAGGAGGACGACGACGAAGACCCCAATGGCGAGGACGACCACCTCGAGCGACAGGATGATTCCGAGGACCAAACCCAACACCCTAACCCCCAATCCGCTTCTAATTCTCAAGCGCAGCTCGAGATCGAGGTCTTGTCCGACGATGGAGTCCAACTTTCTCAGTTCCCTAGAGTGATCAAGCGCACTGTCAATCGCCCTCACGCATCTGTCACAGCAATTGTCGCTCTGGAATGTGCCAATGAGTCTGGAGACAACAAGGGTCAGTTGCAGAATTCTCCATTTTTGGAGAATGTGTCGCACGGGCAGCTTCAGGCGCTTTCTACCGTGCCCGCCGATAGTTCAGCTCTGGATCAGGACCGTAACGAGGGAAGTAATTTGGCTTATGTGATCGCCCCGCCTCCCGTACTGGAAGGCCGTGGCATTGTCAAGCGGTTTGGGAGTAGGATTCTGGTAGTTCCAATGCATTCAGAATGGTTTTCACCATCTACAGTGCATCGGCTTGAGAGACAAGTGGTGCCACGTTTTTTCTCTGGAAAATCACCGGAGCATACCCCAGAGAAGTACATGGAATGTAGAAATTATATAGTTGCAAGATACATGGAAGACCTGGGGAAGAGGATTACAATTTCTGATTGTCAGGGATTGGTAGTTGGGGTTGATAATGAAGATTTAACTCGAATTTTCCGGTTCCTTGATCATTGGGGAATCATCAACTACTGTGCTCAGGTGCCAAGTCACAATCCTTGGAATGATGAGTCTTACCTGAAGGATGAGGCAAGCAGTGAGATTCGTGTGCCATCAGATGCCCTAAAATCTATAGATGGTTTGATCAAATTTGACAAGCCAAAGTGTAAACTCAGAGCAGACGAAATTTATTCATCATTGAGGACTCAGAATGCTGATATTTCTGATTTGGAGGACAGAATAAGAGAGAATCTATCTGAAAATCATTGCAATTATTGTTCCCGTCCTCTTCCTGCTGTTTACTACCAGTCACAAAAAGAGGCTGATGTTCTTCTCTGCACTGATTGTTTCCATGATGGGAGATTTGTCGTTGGTCATTCAAGTATAGATTTTATAAGGGTTGATTCAACAAGAGATTATGGTGATCTGGATGGAGATAGTTGGACTGATCAAGAAACCTTGCTGCTGCTTGAAGCAATGGAGATTTACAATGAGAACTGGAATGAAATTGCTGAGCATGTTGGTACCAAGTCAAAAGCACAATGTATTCTCCATTTTCTTCGTCTACCCATGGAAGATGGAAAATTGGAAAATATCAATGTTCCAAGAACGTCATTGTCATCAAATGTGTCAAATAGAGATGGTTGTGACAGATTGCGTTCAAATTCAGATGCAGATTTAGCAGGACCGACTCAGAGCATTGATCCCAATCGCAGGCTCCCTTTTTCGAATTCTGAAAATCCTGTTATGGCTCTGGTTGCCTTTTTGGCCTCTGCTATTGGACCTAGAGTAGCTGCTGCTTGTGCACATGCAGCATTAGCAGAGCTGTCGGAGAATAATTCTGGTAGCATGTCACAGACAGAAGCACCAGGGCATAGTAACAAGATGAACTTTGAGAGCACTCATAGCAAAGATGGTGGTCTTCTTGGAGAAATTGCAAACCCAAATCAGCAAGATGAGGACGAGGCAAAAGCTCTTGGTTCACAGGTTCTAAATGAGGGTGAGGCCATCCCTCTATCTGCTGAGAAAGTTAAAGATGCTGCTAAGGCGGGCTTGTCTGCTGCAGCAATGAAAGCTAAACTGTTTGCAGATCATGAAGAAAGAGAAATTCAGAGGCTATGTGCCAGTATTATAAACCATCAGCTGAAAAGATTGGAATTGAAGCTCAAGCAGTTTGCTGAAATTGAAACGCTGTTGATGAAAGAATGTGATCAAATGGAGAAGGGAAGACAAAGGTTTGCTGCTGAACGTTCCCATCTTTTATCAGCATGGCTTGGATCTGGCGTAGCCACAAGCACATCAGGTGTTGGTCCTTCTACAATTAGCAACAACAACAGCAACAGTAGACAACAAATGGCCTTTGGATCTCCTCCACGGCCTAGTGTCTCAGGGTACACGAGTGGCCAACCAGTTCATCCGCACATGTCCTTTGTCCCGCGGCCTTCCATGTTTGGTGGGTTAGGGCAAAGGTTACCCCTTTCTATGATACAACAATCACAATCAAATTCTCCAAATGCCATGTTTAAAGCCCCCGGTAATGTGCAACCTTCTACCAATCATCCATTGTTGAGGCCTGTATCAGGTACTAACTCTGGTTTAGGTTAA 2577 0.4598 MRKKNCPVFQRAKTKGQSGDQRALTGRDPFSLSLCPSSQFHTLCANQRPHNQISLSLPPSLKPLLTMPASPSENRTKWRKRKREPQISRRQQKHEEEEDDDEDPNGEDDHLERQDDSEDQTQHPNPQSASNSQAQLEIEVLSDDGVQLSQFPRVIKRTVNRPHASVTAIVALECANESGDNKGQLQNSPFLENVSHGQLQALSTVPADSSALDQDRNEGSNLAYVIAPPPVLEGRGIVKRFGSRILVVPMHSEWFSPSTVHRLERQVVPRFFSGKSPEHTPEKYMECRNYIVARYMEDLGKRITISDCQGLVVGVDNEDLTRIFRFLDHWGIINYCAQVPSHNPWNDESYLKDEASSEIRVPSDALKSIDGLIKFDKPKCKLRADEIYSSLRTQNADISDLEDRIRENLSENHCNYCSRPLPAVYYQSQKEADVLLCTDCFHDGRFVVGHSSIDFIRVDSTRDYGDLDGDSWTDQETLLLLEAMEIYNENWNEIAEHVGTKSKAQCILHFLRLPMEDGKLENINVPRTSLSSNVSNRDGCDRLRSNSDADLAGPTQSIDPNRRLPFSNSENPVMALVAFLASAIGPRVAAACAHAALAELSENNSGSMSQTEAPGHSNKMNFESTHSKDGGLLGEIANPNQQDEDEAKALGSQVLNEGEAIPLSAEKVKDAAKAGLSAAAMKAKLFADHEEREIQRLCASIINHQLKRLELKLKQFAEIETLLMKECDQMEKGRQRFAAERSHLLSAWLGSGVATSTSGVGPSTISNNNSNSRQQMAFGSPPRPSVSGYTSGQPVHPHMSFVPRPSMFGGLGQRLPLSMIQQSQSNSPNAMFKAPGNVQPSTNHPLLRPVSGTNSGLG 858
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g0248 858 MobiDBLite consensus disorder prediction 549 564 - -
Lele25g0248 858 PANTHER SWI/SNF COMPLEX-RELATED 452 746 - -
Lele25g0248 858 FunFam SWI/SNF complex subunit SMARCC2 isoform c 252 340 - -
Lele25g0248 858 MobiDBLite consensus disorder prediction 754 793 - -
Lele25g0248 858 MobiDBLite consensus disorder prediction 1 27 - -
Lele25g0248 858 MobiDBLite consensus disorder prediction 97 114 - -
Lele25g0248 858 SUPERFAMILY Homeodomain-like 245 338 IPR009057 -
Lele25g0248 858 CDD SANT 471 513 IPR001005 -
Lele25g0248 858 Pfam SWIRM domain 249 335 IPR007526 GO:0005515
Lele25g0248 858 Gene3D - 468 518 - -
Lele25g0248 858 SUPERFAMILY Homeodomain-like 469 523 IPR009057 -
Lele25g0248 858 MobiDBLite consensus disorder prediction 54 132 - -
Lele25g0248 858 MobiDBLite consensus disorder prediction 531 564 - -
Lele25g0248 858 MobiDBLite consensus disorder prediction 821 858 - -
Lele25g0248 858 ProSiteProfiles Zinc finger ZZ-type profile. 409 463 IPR000433 GO:0008270
Lele25g0248 858 ProSiteProfiles SWIRM domain profile. 246 344 IPR007526 GO:0005515
Lele25g0248 858 Gene3D - 252 339 IPR036388 -
Lele25g0248 858 ProSiteProfiles SANT domain profile. 467 518 IPR017884 -
Lele25g0248 858 ProSiteProfiles Myb-like domain profile. 464 514 IPR001005 -
Lele25g0248 858 SMART sant 468 516 IPR001005 -
Lele25g0248 858 Pfam SWIRM-associated region 1 674 744 IPR032451 -
Lele25g0248 858 FunFam SWI/SNF complex subunit SMARCC2 isoform C 468 518 - -
Lele25g0248 858 Pfam Myb-like DNA-binding domain 471 513 IPR001005 -
Lele25g0248 858 Coils Coil 391 411 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g0248 Lele-ChrLele25 1469933 1475357 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele25g0248 414 510 EF-hand Containing Proteins AT3G07740 33.962 1.35e-10 62.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0248 25 1469933 1475357 Lele27g1840 27 23250713 23257592 hybridization
Lele25g0248 25 1469933 1475357 Lele28g0268 28 1581010 1586077 hybridization