Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g1910 ATGTCTGTTATAGATGTATCGAAAATGACAAAGATTAAGGCTTTGAGATCAGAGCAAATGGCGAAATCCAGTGCAGACGATGCTGAACTCCGTCGAGCTTGCCAGTCTGCGATCGAAGGCACCAAACAGAAGTTGAACACGGTGCTTCAACCAACTGGCTTTCGGACATTCAAAGTGAAAGGTCAGAGGACTAAAGCTTTTCTTCGAGTCTTAAAGTACTCCAATGGAGGAGTTATTGAGCCTGCAAAGTTATACAAGTTGAAACACCTCTCGAAAATGGAACTTATATCAGCTGACCCCAGTGGATGTACGTTTACGCTGGGATTTGATAACATCAGAAACCATACTTCGACTCCTCCTCAGTGGACAATGCGCAATGTTGATGACAGGAACCGCATCCTAATGCAAATCTTAAATATATGCAAAGATGTACTCGGTCGCCTTCCTAAGGTTATTGGCATAGATGTTGTGGAGATGGCTCTCTGGGCTAAGGAGAACACGCCCGCAGTTGCCGCTCATGCAAGCCCACAATATGGCGGTCCTGTTGAATCTGATGTGACTGAGACAACAGAACTGAAAGTCAATGTAGAGAAGGAACTTGTTTCCCAGGCAGAAGAAGAGGACATGCAGGCTCTTCTCGGAACTTATGTCATGGGTATTGGTGAAGCAGAGGCATTTTCTGAAAGGCTGAAGAGAGAACTCCAAGCACTGGAAGCAGCAAATGTGCATGCCATCTTAGAAAGTGAACCTCTGATAGATGAGGGTCTTGAAGCGGCAGCACATTGTGTGGAAGACATCGATGAATGGTTGTGCATTTTCAATGTGAAACTAAGGCACATGAGGGAGGATATTGAATCAATAGAAACACGCAATAACAAGTTGGAAACGCAATCAGTAAACAACAAAGCTCTTATTGAGGAAGTTGATAAGCTTCTTGAGCGGTTGCATGTCCCTTCTGAGCATGCAGCTTGTCTAACAGGAGGTTCATTTGATGAGGCACGTATGATTCGGAATGTGGAAGCATGTGAGTGGTTGGCAGGTGCCTTGCATAGTCTCCAAGGGATGCTTAACACAGATCCTGTTTTTGCAAAGATGAGAGCTGTTAAAGACAGGCATGCGGAACTAGAAAAATTAAAATCTACTTTTGTCAGGAGAGCTTCTGAATTCTTATCAAATTATTTTGCCAGTTTGGTGGATTTTATGATTAATGATAAAAATTACTTTTCCCAGAAAGGACAGTTGAAGAGGCCCGACCATGCTGACTTACGGCGCAAATGCAAGACATATGCATGCCTTCTGCGACATTTAAAGGGTCTTGATAAAAATTGCTTAGGTACAGTGAGGAAAGCTTATTGCAGTTCTCTCAACGTGCTTCTCAGAAGGGAGGCCAGTGAGTTTGCTAATGAACTTCATTCTATTACTAAAGCGCCTAAAAATCCAACTGTTTGGCTTGAGGGTTCCGCAGGTTCTGCTCAGAATGCAAACATTGCTGACACTTCTTCAGTTTCTGAGGCTTATGCAAGGATGCTCACAGTTTTTGTCCCACTTCTGGTGGATGAGAGCTCTTTTTTGGCTCGCTTCATGTGTTTCGAAGTTCCCACAGTGGCTCCTCCGGGAGGCAGTATTAATGGTGAAGATGATGAATATGATGAGGATGGTGATGAAGCCGACGATGATGATTTGGGGATTATGGACATCGACGAGAATGATAGCAAATCCGGTACTAATCCTGCGGAGCTTGCATCTTTAAATGGGTCCCTTCAGGATTTGCTAGATGGAATCCAGGAAGACTTCTATTCTGTCGTAGATTGGGCATACAAAATTGATCCTTTGTGCTGCATATCAATGCACGGAATAACAGAGCGCTTTCTCTCTGGTCAGAAAGCTGATGTGGCGGGATTTGTTAGCCTTGTGCTTGGGGACCTAGAGTCTCGGATATCCATGCAGTTCATCCGTTTTGTAGATGAAGCTTGCCATCAGATTGAAAGATACGAGCGCAATGTGCGCCAAATGGGTGTCTTGGCTTATATTCCCAGATTTGCAACCCTTGCAACTCGGATGGAGCAGTACATCCAAGGACAGACAAGGGATTTGGTTGACCAAGCATATATGAAATTTGTTACCATAATGTTTGTGACGTTGGAAAAAATTGCACAAATGGATCCAAAATATGAAGATATTTTTCTTCTAGAGAACTATGCGGCATTTCAAAATAGCTTGTATGACTTGGCTAATGTTGTTCCCACTTTGGCCAAGTTTTACCATCAGGCGAGTGAATCCTATGAACAAGCTTGCGCACGCCATATTAGCATGGTTATTTACTATCAATTTGAACGTCTTTTCCAGTTCGCTAAAAGGATTGAGGATTTAATGTTCACTATCCAACCTGAAGAGATTCCTTACCAGCTGGGGTTGTCAAAAGCGGATATGAGGAAGATGTTAAAAGCCAGTTTATCTGGGGTTGATAGGTCTTTTGGTGCAATGTATAAGAAATTACAGAAGAACTTGACTTCGGAGGAACTGTTACCTTCCTTGTGGGAAAAATGCAAGAAGGAGTTTCTCGATAAGTATGAAAGCTTTGTGCAGCTCGTCTCCAAGACCTACCCTTCGGAGAATATACCATCTGTAGCGGAGATCAGAGACATTTTAGTTAGCATTTAA 2661 0.4318 MSVIDVSKMTKIKALRSEQMAKSSADDAELRRACQSAIEGTKQKLNTVLQPTGFRTFKVKGQRTKAFLRVLKYSNGGVIEPAKLYKLKHLSKMELISADPSGCTFTLGFDNIRNHTSTPPQWTMRNVDDRNRILMQILNICKDVLGRLPKVIGIDVVEMALWAKENTPAVAAHASPQYGGPVESDVTETTELKVNVEKELVSQAEEEDMQALLGTYVMGIGEAEAFSERLKRELQALEAANVHAILESEPLIDEGLEAAAHCVEDIDEWLCIFNVKLRHMREDIESIETRNNKLETQSVNNKALIEEVDKLLERLHVPSEHAACLTGGSFDEARMIRNVEACEWLAGALHSLQGMLNTDPVFAKMRAVKDRHAELEKLKSTFVRRASEFLSNYFASLVDFMINDKNYFSQKGQLKRPDHADLRRKCKTYACLLRHLKGLDKNCLGTVRKAYCSSLNVLLRREASEFANELHSITKAPKNPTVWLEGSAGSAQNANIADTSSVSEAYARMLTVFVPLLVDESSFLARFMCFEVPTVAPPGGSINGEDDEYDEDGDEADDDDLGIMDIDENDSKSGTNPAELASLNGSLQDLLDGIQEDFYSVVDWAYKIDPLCCISMHGITERFLSGQKADVAGFVSLVLGDLESRISMQFIRFVDEACHQIERYERNVRQMGVLAYIPRFATLATRMEQYIQGQTRDLVDQAYMKFVTIMFVTLEKIAQMDPKYEDIFLLENYAAFQNSLYDLANVVPTLAKFYHQASESYEQACARHISMVIYYQFERLFQFAKRIEDLMFTIQPEEIPYQLGLSKADMRKMLKASLSGVDRSFGAMYKKLQKNLTSEELLPSLWEKCKKEFLDKYESFVQLVSKTYPSENIPSVAEIRDILVSI 886
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g1910 886 Coils Coil 277 314 - -
Lele27g1910 886 MobiDBLite consensus disorder prediction 538 576 - -
Lele27g1910 886 Coils Coil 220 247 - -
Lele27g1910 886 Pfam Exocyst complex component SEC3 N-terminal PIP2 binding PH 60 142 IPR028258 -
Lele27g1910 886 Pfam Exocyst complex component Sec3 494 869 IPR019160 GO:0000145|GO:0006887
Lele27g1910 886 Pfam Exocyst complex component Sec3 223 487 IPR019160 GO:0000145|GO:0006887
Lele27g1910 886 SMART Sec3_PIP2_bind_2 42 144 IPR028258 -
Lele27g1910 886 MobiDBLite consensus disorder prediction 544 565 - -
Lele27g1910 886 PANTHER SEC3/SYNTAXIN-RELATED 52 882 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g1910 Lele-ChrLele27 23680627 23688423 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele27g1910 20 886 EF-hand Containing Proteins AT1G47550 75.785 0.0 1386
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0172 25 1037911 1047527 Lele27g1910 27 23680627 23688423 hybridization
Lele26g0181 26 1062125 1069151 Lele27g1910 27 23680627 23688423 hybridization