Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g0172 ATGTCGCTTTCCATGTCTTCCCTTACAGCTTCCTTCCCCTCTCTCTCGTTCTCCTCCCATATTTCCCAGAAACCGCACGGCCTCTCTTTTGGTAGAACCCAATCCATCTCAATCTCCCACGTGTCCAGAATCCCCTTGCTGGTGGCATCCGCCGCTGTCGCATCTCCGTCGGCATTGGAAACGACCGACCTGAAGAAATACGTAAAATCGAGGCTTCCTGGTGGTTTCGCTGCTCAAACAATCATAGGCACTGGTCGCCGAAAAAGCGCCATTGCTCGGGTTGTTCTCCAGGAAGGAACTGGCAAATTCATTATCAATTACCGTGACGCTAAGGAATATCTTCAGGGAAATCCATTGTGGCTTCAGTACATTAGGGTCCCATTAATAACTTTGGGATATGAAAATAGTTATGATGTATTTGTCAAAGCTGAGGGCGGTGGCCTCTCTGGTCAGGCTCAAGCAATCTCCCTTGGCATTGCTCGGGCCTTGCTAAAGGTGAGCGAAGATCATAGATCTCCTCTGAGACAGGAAGGGCTCTTGACCAGAGATTCAAGAGTGGTTGAGAGGAAGAAACCTGGTCTGAAGAAAGCTCGTAAAGCTCCCCAGTCTGTTATAGATGTATCGAGAATGACAAAGGTGTTGCAGGGAATTGAAGCGGCAGCACATTGTGTGGAAGACATCGATGAATGGTTATGCATTTTCAATGTGAAACTAAGGCACATGAGAGAGATAGAAACACGCAATAACAAGTTGGAAACGCAATCAGTAAACAACAAAGCTCTTACTGAGGAAGTTGATAAGCTTCTTGAGCGGTTGCATGTCCCTTCTGAGCATGCAGCTTGTCTAACAGGAGGTTCATTTGATGAGTCACGTATGATTCGGAATGTCGAAGCATGTGAGTGGTTGGCAGGTGCCTTACATAGTCTCCAAGGGATGCTTAACACAGATCCTGTTTTTGCAAAGATGAGAGCTGTATGTTCTCTTGCTTGCTTGTACAGTGAGGAAAGCTTATTGCAGTTCTCTCAACGTGCTTCTCAGAAGGGAGTTTCCTGCCTCCTTCTGCTGGTCAGTGAGTTTGCGAATGAACTTCGTGCTATCACTAAAGCGCCTAAAAATCCAACTGTTTGGCTTGAAGGTTCCGCAGGTTCTGCTCAGAATGCAAACATTGCTGACACTTCTTCAGTTTCTGAGGCTTATGCAAAGGTGCTCACAGTTTTTGTCCCACTTCTGGTGGATGAGAGCGCTTTTTTGGCTCGCTTCATGTGTTTCGAAGTTCCCACAGTGGCTCCTACGGGAGGCAGTACTAATGGTGAAGATGATGAATATGATGAGGATGGTGATGAAGCCGACGATGATGATTTGGAGATTATGGACATCGACGAGAATGATAGCAAATCCGGTACTAATCCTGCGGAGCTTGCATCTGTAAATGGATCCCTTCAGGATTTGCTAGATGGAATCCAGGAAGACTTCTATTCTGTGGTAGATTGGGCATACAAAATTGATCCTTTGTGCTGCATATCAATGCACGGAATAACAGAGCGCTTTCTCTCTGGTCAGGAAGCTGATGTGGAGGGATTTGTTAGCCTTGTGCTTGGTGACCTAGAGTCTCGGATATCCATGCAGTTCATCCGTGAATGTGAAATGGATCCCCAGTCCCTACTTCTTCCCCTTCCTAGTTCTCGGTTCATGCTTCATATGATTCATATCTCAATTATTAGATTTGCAACCCTTGCAACGCGGATGGAGCAGTACATCCAAGGACAGTCAAGGGATTTGGCTGACCAAGCATATATGAAATTCCAATTTGAACGTCTTTTCCAGTTCGCTAAAAGGATTGAAGACTTAATGTTCACTATCCAACCTGAAGAGATTCCTTACCAGCTGGGGTTGTCAAAAGCGGATATGAGGAAGATGTTGAAGGCCAGTTTATCTGGGGTTGATAGGTCTTTTGGTGCCATGTATAAGAAATTACAGAAGAACTTGCCTTCGGAGGAACTGTTACCTTCCTTGTGGGAAAAATGCAAGTTATTAACAGTTGGTTCATGGTTTCAAGGTTTGGATTGGACCGAGTTGTAA 2079 0.456 MSLSMSSLTASFPSLSFSSHISQKPHGLSFGRTQSISISHVSRIPLLVASAAVASPSALETTDLKKYVKSRLPGGFAAQTIIGTGRRKSAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIRVPLITLGYENSYDVFVKAEGGGLSGQAQAISLGIARALLKVSEDHRSPLRQEGLLTRDSRVVERKKPGLKKARKAPQSVIDVSRMTKVLQGIEAAAHCVEDIDEWLCIFNVKLRHMREIETRNNKLETQSVNNKALTEEVDKLLERLHVPSEHAACLTGGSFDESRMIRNVEACEWLAGALHSLQGMLNTDPVFAKMRAVCSLACLYSEESLLQFSQRASQKGVSCLLLLVSEFANELRAITKAPKNPTVWLEGSAGSAQNANIADTSSVSEAYAKVLTVFVPLLVDESAFLARFMCFEVPTVAPTGGSTNGEDDEYDEDGDEADDDDLEIMDIDENDSKSGTNPAELASVNGSLQDLLDGIQEDFYSVVDWAYKIDPLCCISMHGITERFLSGQEADVEGFVSLVLGDLESRISMQFIRECEMDPQSLLLPLPSSRFMLHMIHISIIRFATLATRMEQYIQGQSRDLADQAYMKFQFERLFQFAKRIEDLMFTIQPEEIPYQLGLSKADMRKMLKASLSGVDRSFGAMYKKLQKNLPSEELLPSLWEKCKLLTVGSWFQGLDWTEL 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g0172 692 Pfam Exocyst complex component Sec3 209 344 IPR019160 GO:0000145|GO:0006887
Lele25g0172 692 Gene3D - 72 204 IPR014721 -
Lele25g0172 692 Hamap 30S ribosomal protein S9 [rpsI]. 76 206 IPR023035 -
Lele25g0172 692 MobiDBLite consensus disorder prediction 431 454 - -
Lele25g0172 692 FunFam 30S ribosomal protein S9 76 204 - -
Lele25g0172 692 MobiDBLite consensus disorder prediction 437 454 - -
Lele25g0172 692 Coils Coil 251 271 - -
Lele25g0172 692 Pfam Ribosomal protein S9/S16 85 203 IPR000754 GO:0003735|GO:0005840|GO:0006412
Lele25g0172 692 ProSitePatterns Ribosomal protein S9 signature. 145 163 IPR020574 GO:0003735|GO:0005840|GO:0006412
Lele25g0172 692 PANTHER SEC3/SYNTAXIN-RELATED 600 676 - -
Lele25g0172 692 SUPERFAMILY Ribosomal protein S5 domain 2-like 80 202 IPR020568 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g0172 Lele-ChrLele25 1037911 1047527 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele25g0172 514 676 EF-hand Containing Proteins AT1G47550 48.214 3.18e-35 141
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0172 25 1037911 1047527 Lele27g1910 27 23680627 23688423 hybridization
Lele25g0172 25 1037911 1047527 Lele28g0184 28 1078501 1085544 hybridization