Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g1840 ATGGTGGGTTTTGGTTTTCTGGAGCGACAGCATAAGGAGACGGAGGTGGGCTTTGAGGGGCGGGTTTTGTGCAGAGTTTGTGGGGTTGGAGGCGTCGCAGGAAGTGATCACGATTTGGATGAGGGAGAGACTCTTGAGGATGAGGCGGACCTTAATTTCATTCTCGCACTCTTGCTACATCCATCAGGAAGAAAAATTGCACCGTATTCCAAAGAGCCAAAACCAAAGGCCAAAGCGGAGACCAGAGAGCACTCACTGGGAGAGATCCCTTCTCTCTCTCTCTGCCCCTCTTCCCAATTCCTCACCCTTTGCGCCAATCAACGACCCCACAATCAAATTTCCCTCTCTCTCCCTCCCTCCCTTAAACCTCTCCTTACCATGCCAGCTTCCCCTTCAGAAAACCGAACCAAATGGCGGAAGCGCAAGAGAGAGCCCCAAATCAGCCGGCGGCAACAGAAGCACGAGGAGGAGGACGACGACGACGAAGACCCCAATGGCGAGGACGACCACCTCGAGCGACAGGATGATTCCGAGGACCAAACCCAACACCCTAACCCCCAATCCGGTTCTAATTCTCAAGCGCAGCTCGAGATCGAGGTCTTGTCCGACGATGGAGTCCAAATTTCTCAGTTCCCTAGAGTGATCAAGCGCACTGTCAATCGCCCTCACGCATCCGTCACGGCAATTGTCGCTCTGGAACGTGCCAATGAGTGTGGAGACAACAAGGGTGAGTTGCAGAATTCTCCATTTTTGGAGAATGTGTCGCACGGGCAGCTTCAGGCGCTTTCTACCGTGCCCGCCGATAGTTCAGCTTTGGATCAGGACCGTAACGAGGGAAGTAATTCGGCTTATGTGATCGCCCCGCCTCCTGTACTGGAAGGCCGTGGCATTGTCAAGCGGTTTGGGAGTAGGGTCCTGGTAGTTCCAATGCATTCAGAATGGTTTTCACCAGCTACAGTGCATCGGCTTGAGAGACAAGTGGTGCCACGTTTTTTCTCTGGAAAATCACCGGATCATACCCCAGAGAAGTACATGGAATGTAGAAATTATATAGTTGCAAGATACATGGAAGACCTGGGGAAGAGGATGATTACCATTTCTGATTGTCAGGGATTGGTAGTTGGGGTTGATAATGAAGATTTAACTCGAATTTTCCGGTTCCTTGATCATTGGGGAATCATCAACTACTGTGCTCAGGTGCCAAGTCACGATCCTTGGAATGATGAGTCTTACCTGAAGGACGAGGCAAGCGGTGAGATTCGTGTGCCATCAGATGCCTTAAAATCTATAGATGGTTTGATCAAATTTGACAAGCCAAAGTGTAAACTCAAAGCAGACGAAATTTATTCATCATTGACGACTCAGAATGCTGATATTTCTGATTTGGAGGACAGAATAAGAGAGAATCTATCTGAAAATAATTGCAATTATTGTTCCCGTCCTCTTCCTGCTGTTTACTATCAGTCACAAAAAGAGGCTGATATTCTTCTCTGCACTGATTGTTTCCATGATGGGAGATTTGTCGTTGGTCATTCAAGTATAGATTTTATAAGGGTTGATTCAACAAGAGATTATGGTGATCTGGATGGGGATAGTTGGACTGATCAAGAAACCTTGCTGCTGCTTGAGGCAATGGAGATTTACAATGAGAACTGGAATGAAATTGCTGAGCATGTTGGTACCAAGTCAAAAGCACAATGTATTCTCCATTTTCTCCGTCTACCCATGGAAGATGGAAAATTGGAAAATATCAATGTTCCAAGAACGTCATTGTCATCAAATATGTCAAATAGAGATGATTGTGAAAGATTGCGTTCAAATTCAGATGCAGATTTAACAGGACCGACTCAGAGCATTGATCCCAATCGCAGGCTTCCTTTTTCAAATTCTGAAAATCCTGTTATGGCTCTGGTTGCCTTTTTGGCCTCTGCTATCGGACCTAGAGTAGCTGCTGCTTGTGCACATGCAGCATTAGCAGAGCTGTCGGGGAATAATTCTGGTAGCATGTCACAGACAGAAGCACCAGGGCATAGTAACAGGATGAACTTTGAGAGCACTCATAGCAAAGATGGTGGTCTTCTTGGAGAAATTGCAAACCCAAATCAGCAAGATGAGGACGAGGCAAAAGCTCTTGGTTCACAGGTTCTAAATGAGGGTGAGCCCATCCCTCTATCTGCTGAGAAAGTTAAAGATGCTGCTAAGGCGGGCTTGTCTGCTGCAGCAATGAAAGCTAAACTGTTTGCAGATCATGAAGAAAGAGAAATTCAGAGGCTATGTGCCAGTATTATAAACCATCAGCTGAAAAGATTGGAATTGAAGCTCAAGCAGTTTGCTGAAATTGAAACGCTGTTGATGAAAGAATGTGATCAAATGGAGAAGGGAAGACAAAGGTTTGCTGCTGAACGTTCCCGTCTTTTATCAACATGGCTTGGATCTGGTGTAGCCACAAGCACATCAAGTGTTGGTCCTTCTACAATTAGCAACAACAACAGCAACAGTAGACAACAAATGGCCTTTGGATCTCCTCCACAGCCTAGTGTCTCAGGGTACACAAGTGGCCAACCAGTTCATCCACACACGTCCTTTGTCCCGCGGCCTTCCATGTTTGGTGGGTTAGGGCAAAGGTTACCCCTTTCTATGATACAACAATCACAATCAAATTCTCCAAATGCCATGTTTAAAGCCCCCGGTAATGTGCAACCTTCTACCAATCATCCATTGTTGAGGCCTGTATCAGGTACTAACTCTGGTTTAGGTTAA 2760 0.4638 MVGFGFLERQHKETEVGFEGRVLCRVCGVGGVAGSDHDLDEGETLEDEADLNFILALLLHPSGRKIAPYSKEPKPKAKAETREHSLGEIPSLSLCPSSQFLTLCANQRPHNQISLSLPPSLKPLLTMPASPSENRTKWRKRKREPQISRRQQKHEEEDDDDEDPNGEDDHLERQDDSEDQTQHPNPQSGSNSQAQLEIEVLSDDGVQISQFPRVIKRTVNRPHASVTAIVALERANECGDNKGELQNSPFLENVSHGQLQALSTVPADSSALDQDRNEGSNSAYVIAPPPVLEGRGIVKRFGSRVLVVPMHSEWFSPATVHRLERQVVPRFFSGKSPDHTPEKYMECRNYIVARYMEDLGKRMITISDCQGLVVGVDNEDLTRIFRFLDHWGIINYCAQVPSHDPWNDESYLKDEASGEIRVPSDALKSIDGLIKFDKPKCKLKADEIYSSLTTQNADISDLEDRIRENLSENNCNYCSRPLPAVYYQSQKEADILLCTDCFHDGRFVVGHSSIDFIRVDSTRDYGDLDGDSWTDQETLLLLEAMEIYNENWNEIAEHVGTKSKAQCILHFLRLPMEDGKLENINVPRTSLSSNMSNRDDCERLRSNSDADLTGPTQSIDPNRRLPFSNSENPVMALVAFLASAIGPRVAAACAHAALAELSGNNSGSMSQTEAPGHSNRMNFESTHSKDGGLLGEIANPNQQDEDEAKALGSQVLNEGEPIPLSAEKVKDAAKAGLSAAAMKAKLFADHEEREIQRLCASIINHQLKRLELKLKQFAEIETLLMKECDQMEKGRQRFAAERSRLLSTWLGSGVATSTSSVGPSTISNNNSNSRQQMAFGSPPQPSVSGYTSGQPVHPHTSFVPRPSMFGGLGQRLPLSMIQQSQSNSPNAMFKAPGNVQPSTNHPLLRPVSGTNSGLG 919
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g1840 919 Pfam SWIRM domain 309 396 IPR007526 GO:0005515
Lele27g1840 919 MobiDBLite consensus disorder prediction 609 624 - -
Lele27g1840 919 FunFam SWI/SNF complex subunit SMARCC2 isoform C 529 579 - -
Lele27g1840 919 MobiDBLite consensus disorder prediction 589 624 - -
Lele27g1840 919 ProSiteProfiles SWIRM domain profile. 306 405 IPR007526 GO:0005515
Lele27g1840 919 Pfam SWIRM-associated region 1 735 805 IPR032451 -
Lele27g1840 919 SMART sant 529 577 IPR001005 -
Lele27g1840 919 MobiDBLite consensus disorder prediction 157 174 - -
Lele27g1840 919 SUPERFAMILY Homeodomain-like 530 584 IPR009057 -
Lele27g1840 919 FunFam SWI/SNF complex subunit SMARCC2 isoform c 312 401 - -
Lele27g1840 919 ProSiteProfiles SANT domain profile. 528 579 IPR017884 -
Lele27g1840 919 MobiDBLite consensus disorder prediction 882 919 - -
Lele27g1840 919 MobiDBLite consensus disorder prediction 115 192 - -
Lele27g1840 919 MobiDBLite consensus disorder prediction 813 869 - -
Lele27g1840 919 MobiDBLite consensus disorder prediction 813 858 - -
Lele27g1840 919 Gene3D - 529 579 - -
Lele27g1840 919 ProSiteProfiles Myb-like domain profile. 525 575 IPR001005 -
Lele27g1840 919 Pfam Myb-like DNA-binding domain 532 574 IPR001005 -
Lele27g1840 919 CDD SANT 532 574 IPR001005 -
Lele27g1840 919 ProSiteProfiles Zinc finger ZZ-type profile. 470 524 IPR000433 GO:0008270
Lele27g1840 919 PANTHER SWI/SNF COMPLEX-RELATED 192 807 - -
Lele27g1840 919 Gene3D - 312 400 IPR036388 -
Lele27g1840 919 SUPERFAMILY Homeodomain-like 305 399 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g1840 Lele-ChrLele27 23250713 23257592 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele27g1840 475 571 EF-hand Containing Proteins AT3G07740 33.962 1.22e-10 63.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0248 25 1469933 1475357 Lele27g1840 27 23250713 23257592 hybridization
Lele26g0256 26 1517032 1522064 Lele27g1840 27 23250713 23257592 hybridization