Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g1568 ATGGAATGTGGTTTCATTTTCTTAAATATCCCGCCAATTTTGGTTCCTGGATTTCATATCAATATTCTCACGTATCCATGTATTGAATGGTCAGCATTCTCAATGTCAGGGAACGTTGATGCCATGTTAGCTTGGTACTCAGCTAAAAAGGCCGCCGGATTCGGTCCTGATCTTGAAACATCTGAATCCCTAATATCAGGTTGTATCAAATCAAGAAATTTTGAACTTGCTGATGGAATTTATGAAGAAATGATGTCATCAGGAATTATGCCTAGCATATCCATTCTGGAAAACTTGCTTGAAGGGCTTTGCAGACAAAAGAGTTTGGGTAGAGCCGAGGAGTTCGTCAAGTCTGCGATAGGTGTCGGATGGGAGATCAATGAAAACAGGACTGATAAATTAATGGCACTGTATCAAGAAGTTGGGCAAGGGAAAAGGATGGAGGAGCTGCTTGAAACTACGATGAAGTTCCTTCCTATTACCGATGTTGTCCTCTCCCAAATTCACTGTGGGATTATACAAATAAGAGAAGCTTATGACAGGCTAGATATAGTCTTGGAATGTATAGCGAGTAGCTATACGCCCAGCAGATCCGCTTACGATTTGTTGATATCTGGGTATAGAAGAGCTGGATTACAAGAGAAAGTAGATTCAATGATTGAAGTCATGAAATCAACAGGGGGTTACGTAGCACCTGATGTGGTTGTCCAAACAAAAATGCTTCGTTCTGGATTTGTTAGTAGACAATTGACTATACAGAGTTTAAGTCATTTTCTTCCTCTTTAG 786 0.402 MECGFIFLNIPPILVPGFHINILTYPCIEWSAFSMSGNVDAMLAWYSAKKAAGFGPDLETSESLISGCIKSRNFELADGIYEEMMSSGIMPSISILENLLEGLCRQKSLGRAEEFVKSAIGVGWEINENRTDKLMALYQEVGQGKRMEELLETTMKFLPITDVVLSQIHCGIIQIREAYDRLDIVLECIASSYTPSRSAYDLLISGYRRAGLQEKVDSMIEVMKSTGGYVAPDVVVQTKMLRSGFVSRQLTIQSLSHFLPL 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g1568 261 Pfam PPR repeat 63 89 IPR002885 -
Lele27g1568 261 Pfam PPR repeat 199 225 IPR002885 -
Lele27g1568 261 TIGRFAM PPR: pentatricopeptide repeat domain 63 92 IPR002885 -
Lele27g1568 261 Gene3D Tetratricopeptide repeat domain 15 168 IPR011990 GO:0005515
Lele27g1568 261 PANTHER EXPRESSED PROTEIN 177 227 IPR044179 GO:0003729
Lele27g1568 261 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 57 91 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g1568 Lele-ChrLele27 21487019 21488185 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele27g1568 21 250 Glycosyltransferase AT1G05670 19.917 1.04e-07 50.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0511 25 3222271 3222815 Lele27g1568 27 21487019 21488185 hybridization
Lele26g0529 26 3348583 3350814 Lele27g1568 27 21487019 21488185 hybridization